F22005

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22005

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22005

Determination of introduced cDNA(s)

  • RAFL09-48-G13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-G13 - Resource: pda06386

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-G13 - full reading 
    TTTTTTTTCT TCTCTCTTCC GAAACACCTC TGCCACGCGA GTACTCTCCA 
    CGCTCTTCGA CAGTCGTGAC CATCTTCTTC TCCGATCGTC TTCACCGGTT 
    TTCTTGGGCA TTCCCTCGTG CAATTGTTGC AATAAATACG ACGAAGATGG 
    TTGCTAATAA TAATACTAGT AGCAATCGCA GGAAGAGAAT CATTACTGAA 
    GGCGACATCG CCACTCTTTT GCTGAGATAT GATATGGAGA TGATACTGAG 
    AATGCTACAG GAGATATCTT ATTGTTCCGA AACCAAGATG GACTGGAATG 
    CGTTGGTGAA GAAGACCACT ACCGGAATTA CTAATGCTAG AGAGTACCAG 
    TTGCTATGGC GTCATCTTTC TTATCGGCAT CCTCTCCTCC CTGTGGAAGA 
    TGATGCTCTA CCTCTGGACG ACGATAGTGA CATGGAGTGC GAATTGGAAG 
    CTTCTCCTGC AGTCAGCCAT GAAGCATCAG TGGAGGCTAT TGCACATGTC 
    AAAGTGATGG CTGCTTCATA TGTTCTAAGT GAGTCTGATA TACTCGACGA 
    TTCAACAGTT GAGGCTCCCT TGACTATAAA CATACCTTAT GCTTTGCCTG 
    AGGGTTCTCA GGAACCATCA GAGTCTCCTT GGTCGTCAAG AGGGATGAAT 
    ATCAACTTTC CGGTCTGTCT TCAGAAAGTT ACATCTACCG AGGGGATGAA 
    TGGAAATGGT TCAGCTGGTA TTAGCATGGC TTTTCGGAGG AAAAGGAAAA 
    GATGGTCTGC TGAGGAGGAT GAGGAGCTGT TCGCCGCTGT AAAGCGATGT 
    GGTGAAGGGA ACTGGGCTCA TATTGTTAAG GGAGACTTTA GAGGAGAGAG 
    AACCGCCTCC CAACTCTCGC AGAGGTGGGC GCTTATAAGA AAAAGGTGTC 
    ACACTTCGAC CTCTGTTAGC CAATGTGGCC TACAAGGAAC TGAAGCGAAA 
    CTAGCAGTTA ACCATGCATT ATCTTTAGCT CTGGGAAATC GGCCCCCTTC 
    AAATAAGCTT GCAATAGGTC TTATGCCAAC GACGTCATCT TGTACCATCA 
    CAGAAACGGA AGCGAATGGG GGAAGTTCTT CTCAAGGTCA ACAACAGTCC 
    AAACCAATTG TTCAAGCATT GCCTCGGGCA GGAACATCAC TTCCGGCTGC 
    AAAGTCTCGA GTTGTTAAAA AAACAACAGC AAGCTCCACT TCCAGATCGG 
    ATCTTATGGT AACAGCTAAT TCAGTAGCTG CAGCTGCATG CATGGGTGAT 
    GTATTGACTG CTGCATCAGG ACGAAAGGTC GAACCTGGAA AAACTGATGC 
    TCCACGAGTG CCAAAGACTA AACCTGTAAA ACATGCTTCT ACAGTCTGCA 
    TGCCTCAGCC CTCAGGTAGC CTCTCCATGC CAAAGGTTGA ACCAGGAACG 
    AGTGTTGCCG CCTCTATACG GTCTCTAGCT AATGGAAAAT TGAAACCTGT 
    TATGGCTTCA TCATCTTCCA ACAAACCTCC TCTCATAGCT CCTCGTTCAG 
    AAGGATCTTC AATGCTTTCT GCTTCCGCCC CCTTGGCTTC TCTATCAAGG 
    ATTGTCTCCA ATCAGAGAGT TTTTGCAGGC TCTGTCCCAG CTACTGAGAT 
    TGTCACTTGC AAACCAGATG GTGGACAGAA AGGGCAAGCT CGTGGAAATG 
    AAGCAAGCTC ATCGGCTGCA ATCCAGCCAC ATCAAATAAC CTCAAGAAAC 
    TTGGAGATTA GCCAGGGAAA GCAGGCTACA CAGGCTCAGT CCCCTAATCT 
    CTTGCCTAGG AAAGTTCCAG TAGTTCGGAC TGCAGTTCAT TGTGCCACTA 
    ACCAAAAGTT GATGGATAAA CCATCTGATC AAACTGTAGT ACCTATCAGA 
    GGAGCTGGTT CGCAATCTAA AGCCAAAGGT GAAGTAAACA GTAAGGTTGG 
    TCCGGTGATC AAAGTGAGTA GTGTTTGCGG AAAACCCCTT GAGGTTGCAA 
    CTGTGGCAGG GACCGGACAG GGTGTTTAGT TCTTTGACAA AATCGTTGGA 
    TACTCTGTTT TGGAGCTTTC ATTTGTAGTT TTTATTAGAC TGAAAGAAAG 
    ATATGATGTA AAGGAAGCCA TTCAGTACAT TGGTACTAAT TAATAAGAAT 
    CTCATATACT TACAATCC

    Gene models with high sequence identity

    1. AT1G09710.1 [+] show detail - Homeodomain-like superfamily protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Homeodomain-related 1.7e-09
    HMMSmart SANT, DNA-binding 2.1e-09
    superfamily Homeodomain-like 1.9e-10
    HMMPanther Myb transcription factor 1.9e-05
    HMMPfam Myb, DNA-binding 1.7e-06
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 12.503

    See the detailed result >

    AT1G09710.1

    Model type
    Protein coding
    Short Description
    Homeodomain-like superfamily protein
    Computational Description
    Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G58220.1); Has 2083 Blast hits to 515 proteins in 153 species: Archae - 0; Bacteria - 81; Metazoa - 329; Fungi - 153; Plants - 69; Viruses - 0; Other Eukaryotes - 1451 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR