F21751

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21751

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21751

Determination of introduced cDNA(s)

  • RAFL21-30-D05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL21-30-D05 - Resource: pda11995

    full reading [+] show sequence

    Nucleotide sequence: RAFL21-30-D05 - full reading 
    ATTCGTTATT ATTGTCTATA TTACTCCTTG ATTGTGGTCG ATGACCTCGC 
    TACTTCTTCT CAGAACGCTT CCGCTTCTCC GCAACGGATT TCTCAACCAT 
    CGTCATCAAG TTGGTATCGT AGCTGGTGGA ATTCTCAGTC ACCGTCGGCG 
    TTTGTTGTGT TCTCTTGCTG ATAGACCACA GTTTTACGAG AATAATGATT 
    CTGTTTCTCC GGTGGAGGGA TCCGGCGCGG CGGCGATGAA CGTGACATCG 
    CCTGTTGTTG ATAATAGCTG GCGTTATGAA GATCCTGATT ATCGGAAATG 
    GAAGAATCTA GAGGCTGAGA TTCTTCGAGA TATTGAACCT ATTTCTCTTC 
    TCGCTAAAGA AATTCTTCAT TCCGATAGGT ATTTGGATGG AGAACGCTTA 
    GATTTTGAGG ATGAGAAAAT TGTCATGGAA AAGCTTCTTC CTTATCACCC 
    ATATTCCAAA GACAAAATTG GTTGTGGTCT TGATTTTATA ATGGTTGATC 
    GGCATCCACA ATTCAGGCAC TCAAGATGCC TCTTTGTTGT GAGAACAGAT 
    GGTGGATGGA TAGATTTCTC GTACCAAAAG TGTCTTCGAG CCTATGTTCG 
    AGATAAGTAC CCGTCTCACG CTGAGAGGTT TATTCGTGAA CATTTTAAGC 
    GTGCTAGTAG CTAAAAATCT GTATAACTGT CCCACTCATC ATCACAGCAA 
    ATTCTCATAA ATTTTTAGCT GAAATAACAC AATCAGCTAT GAAGCTTTGT 
    TGTACAAAAT TTATAAATTG CTCAATCTAT TGGAAGACTT GAATGAGTTA 
    GGAAAATAGT AGTTGGTTCA GACTGCAGAA CAATCAATTT TTGAGACCGA 
    AAGTAATTCT AGTTATGGC

    Gene models with high sequence identity

    1. AT3G46630.1 [+] show detail - Protein of unknown function (DUF3223)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G46630.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF3223)
    Computational Description
    Protein of unknown function (DUF3223); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3223 (InterPro:IPR021602); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3223) (TAIR:AT1G45230.1); Has 180 Blast hits to 180 proteins in 34 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR