F21047

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21047

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21047

Determination of introduced cDNA(s)

  • RAFL05-07-A18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-A18 - Resource: pda01103

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-A18 - full reading 
    ATTTACTTTA GTCCTCTCGA ATCCCATAAA GTCCACAACT CTCTCCTTGT 
    AGAGAGAGAG ATTTTATGGC GGTGGAGCTC ATGACTCGGA ATTACATCTC 
    CGGCGTCGGA GCTGATAGCT TCGCCGTTCA AGAAGCAGCT GCTTCAGGAC 
    TCAAAAGTAT CGAAAATTTC ATCGGTTTAA TGTCTCGTGA TAGCTTTAAC 
    TCTGATCAGC CATCTTCTTC TTCCGCCTCC GCCTCCGCCT CCGCCGCCGC 
    AGATCTTGAA TCAGCTCGTA ACACAACGGC GGACGCGGCT GTTTCAAAGT 
    TTAAAAGAGT CATATCTCTC TTAGATCGAA CTCGAACCGG ACACGCCCGG 
    TTTAGACGTG CTCCGGTTCA TGTTATTTCT CCGGTTCTTT TACAAGAAGA 
    ACCAAAAACG ACGCCGTTTC AGTCTCCTCT TCCTCCTCCG CCGCAAATGA 
    TCCGAAAAGG TTCGTTTTCT TCATCGATGA AAACGATTGA TTTCTCATCT 
    CTCTCCTCTG TAACAACGGA ATCAGACAAC CAGAAGAAGA TTCATCATCA 
    TCAACGTCCC TCTGAAACGG CGCCGTTTGC GTCTCAAACT CAAAGCCTCT 
    CCACGACGGT CTCGTCTTTC TCAAAATCAA CAAAGAGAAA ATGTAACTCT 
    GAGAATCTTC TCACCGGAAA ATGCGCTTCC GCTTCTTCCT CCGGTCGTTG 
    TCATTGCTCG AAGAAAAGAA AGATAAAACA GAGGAGAATA ATTAGGGTTC 
    CGGCGATAAG TGCAAAAATG TCCGATGTAC CACCGGACGA TTATTCATGG 
    AGGAAATACG GACAAAAACC AATTAAAGGA TCTCCACATC CAAGAGGATA 
    TTATAAGTGT AGTAGCGTAA GAGGTTGTCC AGCACGTAAA CATGTTGAGA 
    GAGCAGCTGA TGATTCGTCC ATGTTGATTG TTACTTATGA AGGAGATCAT 
    AATCATTCTC TCTCCGCCGC TGATCTCGCC GGAGCCGCCG TTGCTGATCT 
    TATTTTGGAA TCGTCTTGAA AAGAACAAAT CTTTATTTAA GGCTTTTATA 
    ATATAAATTT AGATCCTTAC TTAGTGAAGT ACTCAAACTA TGAATGAAAT 
    CAATGTAATC AAAATCAAAA AGCTTTTGCT AAAAAAGAAA AAAAAAAAAA 
    AAA

    Gene models with high sequence identity

    1. AT2G23320.1 [+] show detail - WRKY DNA-binding protein 15
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan DNA-binding WRKY 30.607
    Gene3D no description 1.1e-24
    HMMSmart DNA-binding WRKY 1.7e-37
    HMMPfam DNA-binding WRKY 4e-29
    HMMPfam Transcription factor, WRKY, Zn-cluster 1.9e-18

    See the detailed result >

    AT2G23320.1

    Model type
    Protein coding
    Short Description
    WRKY DNA-binding protein 15
    Curator Summary
    Encodes WRKY DNA-binding protein 15 (WRKY15).
    Computational Description
    WRKY DNA-binding protein 15 (WRKY15); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 11 (TAIR:AT4G31550.1); Has 3350 Blast hits to 2896 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 3315; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR