F20540

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20540

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20540

Determination of introduced cDNA(s)

  • RAFL06-15-N08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-N08 - Resource: pdz87599

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-15-N08 - 5 prime EST 
    GAAAGAGGAA AATCCCAACA ATAAAGAGCA AACGATCTTA CAGCTCATAA 
    TATTTCGTTA ATTATCAAAT TGCTAATAGG AGAAAAAAAT GGGTCAAGCT 
    TTGGGTTGTA TTCAAGTTGA TCAGTCGAAT GTAGCAATCA AAGAGACTTT 
    TGGGAAATTC GACGAAGTTC TTGAGCCGGG TTGTCACTGT TTGCCATGGT 
    GTTTGGGAAG TCAAGTCGCT GGTCACCTTT CTTTACGTGT TCAACAGCTC 
    GATGTTCGCT GCGAGACAAA GACTAAGGAT AATGTGTTTG TCACGGTTGT 
    TGCTTCCATT CAATACCGTG CCTTAGCGGA GAGTGCTCAA GATGCTTTTT 
    ACAAGCTCAG CAACACGAGG AATCAGATTC AAGCTTATGT CTTTGATGTG 
    ATCCGAGCAA GTGTACCTAA GCTGGATCTA GACTCTACCT TTGAGCAAAA 
    GAATGACATT GCAAAAACCG TTGAGACTGA GCTCGAAAAG GCTATGTCGC 
    ATTACGGGTA TGAGATTGTT CAGACACTGA TTGTGGATAT CGAGCCTGAT 
    GTGCACGTCA AGAGGGCAAT GAATGAGATC AATGCTGCTT CTAGAATGAG 
    AGAGGCAGCG AGTGAGAAAG CTGAGGCAGA GAANATTCTG CAGATCAAGC 
    GTGCTGAGGG AGAAGCTGAA TCGAAATACC TTTCANGTAT GGGTATAGCC 
    CG

    Gene models with high sequence identity

    1. AT1G69840.1 [+] show detail - SPFH/Band 7/PHB domain-containing membrane-associated protein family
      E-value: 0; Score: 99.72

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-15-N08 - 3 prime EST 
    GCCCAAACTC TATCCACAAA CCCATAAAAC AAGAAAATGG ATCAAGTCCA 
    CAAGCCTAGA AGAGAGAAAC GATAAGAAAT TTAAGAACCC ATATAGAGCC 
    AACCGCTAAA AGATAAACCT GAGTAGCAAG TAGTAACACA ACTCTAAAAC 
    TCTGAAAAAG CCTTTTTGTA CTTTGAGACA TTTCTCTACT CAGCAGCAGA 
    GTTACCCTGA AGAAGACCAT CCCTGATCTG TGAAGCAATG TCCCTAACAG 
    CGCCTGGACC GTGCGGTATG AACACCGAGT TTGACTTCGA AGAAGCACCA 
    ATTTCCTTCA ATGTGTCAAA GTACTGAGTC ACAAGAACCA TATCCATCAC 
    GTCTTTGGAA GATGTTCCTG GAACAGACTC GGAGAAGGCG AGGACGCTGT 
    TTCTCAGACC GTCCACAATG GCTTGTCTCT GACGGGCTAT ACCCATACCT 
    GAAAGGTATT TCGATTCAGC TTCTCCCTCA GCACGCTTGA TCTGCAGAAT 
    CTTCTCTGCC TCAGCTTTCT CACTCGCTGC CTCTCTCATT CTAGAAGCAG 
    CATTGATCTC ATTCATTGCC CTCTTGACGT GCACATCAGG CTCGATATCC 
    ACAATCAGTG TCTGAACAAT CTCATACCCG TAATGCGACA TAGCCTTTTC 
    GAGCTCAGTC TCAACGGGTT TTGCAATGTC ATTCTTTTGC TCAAAGGTAG 
    AGTCTAGATC CAGCTTA

    Gene models with high sequence identity

    1. AT1G69840.7 [+] show detail - SPFH/Band 7/PHB domain-containing membrane-associated protein family
      E-value: 0; Score: 99.72

    AT1G69840.1

    Model type
    Protein coding
    Short Description
    SPFH/Band 7/PHB domain-containing membrane-associated protein family
    Computational Description
    SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5669 Blast hits to 5668 proteins in 1821 species: Archae - 158; Bacteria - 3805; Metazoa - 307; Fungi - 277; Plants - 271; Viruses - 5; Other Eukaryotes - 846 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT1G69840.7

    Model type
    Protein coding
    Short Description
    SPFH/Band 7/PHB domain-containing membrane-associated protein family
    Computational Description
    SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1).
    Link
    InterPro Scan - TAIR