F20247

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20247

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20247

Determination of introduced cDNA(s)

  • RAFL06-73-N18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-73-N18 - Resource: pda03459

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-73-N18 - full reading 
    ATAACACATC ATGGTGAACG AAGAAATGGA GTCATCACTT AAAGTCATCG 
    ACGTGGCACG AGTCACACCA TCAAACTCCG ACTCGTCCGA GTCACTCACT 
    CTCCCACTCA CCTTCTTCGA CCTCCTCTGG TACAAACTTC ACGCCGTCGA 
    ACGAGTCATC TTCTACAAAC TCACCGACGC AAGTCGTCCT TTCTTTGACT 
    CAGTCATCGT CCCAAACCTC AAAACATCTC TCTCCTCATC CCTCTCTCAC 
    TACCTCCCAC TCGCCGGAAA ACTCGTGTGG GAACCACTTG ATCCCAAACC 
    GAAAATCGTC TACACCCCAA ACGACGCCGT TTCATTCACC GTCGCCGAGT 
    CAAACGCAGA CTTCTCACGT TTAACCGGCA AAGAACCGTT CCCCACCACC 
    GAGTTATACC CGTTAGTCCC CGAGTTACAT GTCTCCGACG ACTCAGCTTC 
    CGCCGTGTCG TTTCAAGTCA CGTTATTTCC AAACCAAGGG TTTTGCATCA 
    GCGTTAATGC ACATCATGCC GTTTTAGATG GAAAAACGAC AACCAACTTT 
    CTCAAATCTT GGGCACGCAC ATGTAAAAAC CAAGATTCTT TTCTACCGCA 
    GGATCTAATC CCAGTTTACG ATCGTACGGT CATAAAAGAT CCAATGGATT 
    TAGATACAAA GATCTTAAAC GCTTGGCACA GAGTAGCCAA AGTGTTCACC 
    GGTGGTAAAG AACCAGAAAA CCCCAAGAGT TTAAAGCTTT TATGGTCGCC 
    GGAGATTGGT CCTGACGTTT TCCGATACAC TCTCAATCTC ACTAGAGAAG 
    ATATCCAAAA GCTTCGAGAG AGACTCAAGA AAGAGTCTTC TTCTTCCTCT 
    GTTTCCTCAT CACCCAAAGA GCTTCGTTTA TCAACGTTTG TGATTGTTTA 
    CTCTTATGCT TTAACGTGTT TAATCAAAGC TCGAGGCGGT GATCCGAGTA 
    GACCAGTCGG GTACGGATTC GCTGTGGATT GTCGAAGCCT TATGGTTCCA 
    CCGGTTCCAT CGAGTTATTT TGGTAATTGT GTATCTGCTT GTTTTAAAAT 
    GTCGTTAACG GCAGAGACTT TTATGAGTGA AGAAGGGTTT TTAGCTGCTG 
    CGAGAATGGT TAGTGATTCT GTTGAGGCAT TGGATGAGAA TGTTGCATTG 
    AAGATTCCAG AGATTTTGGA AGGGTTTACG ACTCTTTCAC CAGGAACACA 
    GGTTTTGTCT GTTGCCGGGT CGACCCGGTT CGGAGTTTAC GGGTTGGATT 
    TTGGGTGGGG TAGACCGGAG AAAGTGGTGG TTGTGTCAAT TGACCAAGGT 
    GAAGCGATTT CTTTTGCGGA GAGTAGAGAT GGGAGTGGTG GTGTAGAGCT 
    TGGCTTCTCC CTCAAGAAAC ATGAAATGGA TGTTCTTGTT GATTTGCTTC 
    ACAAGGGACT AGAAAATTAA ATCATTTTTT TCTTTCTTCA GAAGAGTAAA 
    ATAATATAAG AAATAAAATT TATTGTG

    Gene models with high sequence identity

    1. AT5G39050.1 [+] show detail - HXXXD-type acyl-transferase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transferase 1.5e-50
    Coil coiled-coil 0
    Gene3D no description 2.2e-39
    Gene3D no description 1.2e-45

    See the detailed result >

    AT5G39050.1

    Model type
    Protein coding
    Short Description
    HXXXD-type acyl-transferase family protein
    Computational Description
    HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G39080.1); Has 1994 Blast hits to 1978 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 30; Plants - 1963; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR