F20029

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20029

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20029

Determination of introduced cDNA(s)

RAFL06-87-J21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-87-J21 - Resource: pda07762

full reading [+] show sequence

ATTCCTCCAT TAAAAAGCTT CTTCCTTCGT TTCTCGTCGG CGTTTTGAGA 
GACATGTGGG AATCGATTTG CCTAACGCTT GCGGCCACCG CCGGAAACAA 
TATCGGCAAG GTTCTCCAGA AGAAGGGCAC TATTATCCTC CCTCCTCTCT 
CCCTTAAGCT TAAGGTGTTA AGAGCATATG CTGAAAACAA ACCATGGGCG 
TTAGGTTTTC TTATGGACAT TGTTGGTGCT TTGTTGATGC TGAGAGCACT 
ATCACTTGCT CCTGTGTCAG TTGTTCAGCC AGTCTCGGGA TGTGGCCTTG 
CCATTCTTTC CGTCTTTTCG CATTTTTATT TGAAGGAAGT CATGAATGTT 
TTTGACTGGA TTGGGATTAC TGTTGCCGGC ATTGGGACCA TAGGAGTTGG 
GGCTGGTGGT GAGGAGCAAG AAGCATCATT AATATCTGTC TTCCAGTTGC 
TGTGGCTAGC ATTGGTTGTT GCCATCTTAT TTGTACTACT AAATGCGTGG 
CTTCATATCT TCAAACGCCA GCGCAGGGAG CAGGAGCTGG GGGAATATGA 
AGTGGTGGAA GAAATCATAT ATGGCTTGGA ATCTGGCATT TTATTCGGAA 
TGGCATCTGT AGTATCAAAG ATGGGTTTTG TATTCGTGGA GCAGGGATTT 
TCTACAATGT TCATTCCCAT GTGCATTTCG ATTAGTATAT GCTGTAGTGG 
AACTGGATTT TTCTACCAGA CTCGGGGACT AAAACATGGG AGAGCAATCG 
TAGTATCCAC TTGCGCTGCT GTGGCATCAA TTGTAACAGG TGTGGTTGCA 
GGAATGTTTG CTCTGGGTGA GAAATTACCC ACTTCACCAT CTGGACGGCT 
TTTACTTCTC CTGGGATGGT TACTTATCAT GCTAGGTGTT GTATTACTAG 
TGACTTCATC ACGGCTTATC AGACATCTTC CACGGTCATT CCGGCGTTCA 
AGGCAAACCA GTTTAGAAAG AGGTTTCAAC ATAAGGCGGA CAACTTCTCA 
CACACCAAAG GATACAAACC CAAGTGCGGT TATCCAGGCA GCAACATTAC 
ACCATCTCTT ATCATCCCCA TCAAAAGACA AAGACTAAAT GGATTCAGAA 
ACACCGAAGA ATATTTGCGG AGTGCATACT TATGTTACAC AAGTTATTTC 
TCGAATTTAT GACTAAAGGT GTCAGATTTT CATATTCCGG GGTTTCATTT 
CATTGATATT CCAATTGTGG GAACAGCTTA AAAGTCAGAG CTTGGGATCA 
ATTTATGACG TAACTTGATG TCTAAAATGT GAAATATGAG TTCCCTTGGA 
CATGTTACTC TAATTGTGCA AACAATCTGG GATATACGAA CCAACTTTGG 
TTTATTGTGT T

Gene models with high sequence identity

AT5G11960.1 [+] show detail - Protein of unknown function (DUF803)
E-value: 0; Score: 99.93

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF803	9.4e-09
superfamily	Multidrug resistance efflux transporter EmrE	2.6e-09
superfamily	Multidrug resistance efflux transporter EmrE	1.9e-05

See the detailed result >

AT5G11960.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF803)
Computational Description: Protein of unknown function (DUF803); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR