F19308

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19308

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19308

Determination of introduced cDNA(s)

  • RAFL06-87-G13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-87-G13 - Resource: pda07751

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-87-G13 - full reading 
    ACACGAGAGA CAGAGAGAGA GAGAGAGGAA ATTTGCTACT GAGAGATACA 
    TTCAGTGAGT GTGTGTCTGT CACCGTGGAG GAGAAACGGA AGGAGGATAG 
    ATGAAACCGA CCGGAGAAGG AGGAGGGGAA GTCGCCGGAG CGGTGGCGGA 
    AGGTTCGGCG TTGTTAATTG TAGGAGTAAA GCCAGATGAA TGGAGTAGAG 
    AGGTTCTTAC ATGGTCTTTG GTGAATGTAG CGCGTCCTGG AGATCGAATC 
    GTTGCTCTTC ATGTTCTCGA TTATTCTCTA GAGGGCTCAA CGTCGCTTAT 
    TTCGTTGGTT AGGAATTTTG ATACTATGCT TGGTGTTTAT GAAAGCTTCT 
    GCAACTTAAA ACAGGTAGAT TTGAAGTTGA AGGTTTTCAG AGGGAAGTCA 
    GCTAGGAAAG TTCTTGTACA AGAAGTTAAA TCGTGTGGAG CTACAAGTTT 
    AATCGTTGGT TCCTCTAGGA AACATCACAC TATCCGTTCT TCAGCTTCTT 
    TAGCCAAGTA TTGTGCCAGG AATCTTGCCA AGGATGTCTC TGTTTTTGCT 
    GTTAAAAGTG GCAAGATTAT GTTCCGCAGA GTACCTAATA CCAATGGTGC 
    AGATGGTCCA CAGATGAATA TTCCCTCTTT AGTTTGTGGA TCACCAGATA 
    TTGCTATTGA AGCGGCAAAG ATTGGAAACA GTTTTAGCCC TGCTAGAACG 
    AGCTCACGCT GGACAAGAAC TAGTCGTAGT TCGTCATTGC AGTCTCCTGA 
    CAGCTTAGGT GTAGACAATT TGTTGGCTTT AGTGCCAGTA CAAACAAATG 
    AGACTGATTC TGGTTCCCTT GAGTCAGGAC CAGGTTGGCA TTTTCTTCGC 
    GGGCTTTACG GTAATAATCG AAAAAGCTGG ACCAAAGTTT CTGCTAAGAA 
    GGCTGTACTT CAGTGGGTTT CGAGGCTGCG AGGTCGGCAT TCAGAAACTG 
    TAATCTATCT GGATAGGAAA CGGAGTGACT CTGGTTGTGA TGAAGATTGC 
    TCTTCTAGTA TTGATGGTGA AGATGTTTCT ATATCACGGT TTGGTTCTGA 
    GCTTATGCAG TCACCTCTTT CTCCTTTCAT TGGATCAAAC AACATTCCAG 
    AAGAGCTGGA AGGTCTACAT GAAAAGTACT CTTCCACATG TAGATTATTC 
    ACATACGAGG AAGTCTTGTC AATTACCTCA AACTTTGCAT CTGAGAACTT 
    GGTTGGAGAA GGTGGTAATA GTTATGTTTA TAGAGGAGAT CTACCAGATG 
    GCAGGGAATT AGCTGTCAAA ATATTGAAAC CTTGTCTGGA TGTGTTGAAG 
    GAATTTATAC TGGAAATTGA AGTCATTACC AGTGTACATC ACAAAAATAT 
    AGTATCTCTC TTTGGTTTCT GTTTCGAGAA TAATAATTTG ATGCTGGTAT 
    ACGATTATCT ACCACGAGGA AGCCTTGAAG AGAACCTTCA TGGCAATAGA 
    AAGGATGCAA AGAAATTTGG CTGGATGGAG AGATATAAGG TGGCAGTGGG 
    TGTTGCCGAG GCGTTAGACT ATCTGCATAA TACTCATGAT CCAGAAGTAA 
    TTCACCGGGA TGTCAAATCT TCTAATGTTC TTTTGGCAGA TGATTTTGAG 
    CCACAGCTCT CAGATTTCGG ATTCGCCAGC TTGGCTTCAA GTACCTCACA 
    GCATGTAGCG GGTGGGGATA TTGCCGGGAC ATTTGGTTAC CTAGCACCAG 
    AGTACTTCAT GCACGGTAAA GTAACCGACA AGATTGATGT CTATGCTTTT 
    GGTGTTGTAT TGCTCGAGCT CATATCGGGT AGAAAACCAA TCTGCGTCGA 
    CCAGTCTAAA GGCCAGGAGA GCCTTGTCTT GTGGGCAAAC CCAATTCTAG 
    ATAGTGGAAA GTTTGCTCAG TTACTGGATC CCAGTCTAGA AAATGATAAC 
    AGTAACGATC TAATCGAGAA ACTATTGTTA GCTGCCACGC TATGCATCAA 
    ACGCACACCT CATGACCGTC CGCAAATTGG CCTTGTCCTA AAGATATTAC 
    AAGGGGAAGA AGAAGCAACA GAGTGGGGAA AGCAACAAGT GAGAGCCTCA 
    GAAGACGTGA GCGCATATTT GACAAATATA GAATCACACA TAAACCTCGC 
    ATTGCTTGAT TTGGAAGATG ATGCAGCTTC TGATAGCAGC CCTGAAGCTA 
    GTAGTATCTC TGTTGAGGAA TACTTGAAAG GGCGATGGAG CCGCACTGCT 
    AGCTTCAACT TCAACTAATA ATTTTTACTA GTTTAACCCC GAAAATCCCA 
    AAATTTGACG ATATTGTAAG TTGTGTAAAT TGTAATCGAT TTTCTGAGAT 
    TCTCAAGCTT TAAGTTGTGT CAATTTAGGA AGAGTGAATA GCTCTTGTAG 
    AGAGGACTTA AGTTGGAATT TGTCTTCTTT GTTTTGTCAG AGCAGAAAAT 
    GTTTCAAGTG TTCCACTTTC ATATCGGTTT TAAAAGTTT

    Gene models with high sequence identity

    1. AT5G63940.1 [+] show detail - Protein kinase protein with adenine nucleotide alpha hydrolases-like domain
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Serine/threonine-protein kinase, active site 0
    Gene3D G3DSA:3.30.200.20 5.69999708784002e-20
    superfamily Protein kinase-like domain 2.8e-73
    HMMPfam UspA 0.0003
    HMMPfam Serine/threonine-protein kinase-like domain 1.9e-38
    ProfileScan Protein kinase, catalytic domain 0
    PatternScan Protein kinase, ATP binding site 0
    HMMPanther PTHR23258 0
    HMMPanther PTHR23258:SF425 0
    superfamily SSF52402 1.2e-06
    Gene3D G3DSA:1.10.510.10 2.19999900980727e-43

    See the detailed result >

    AT5G63940.1

    Model type
    Protein coding
    Short Description
    Protein kinase protein with adenine nucleotide alpha hydrolases-like domain
    Computational Description
    Protein kinase protein with adenine nucleotide alpha hydrolases-like domain; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT1G21590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR