F18533

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18533

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18533

Determination of introduced cDNA(s)

  • RAFL14-53-K08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-53-K08 - Resource: pdz88465

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL14-53-K08 - 5 prime EST 
    AACCGATCGC TTACTTAACA TACTAAGAGA GTTATTAGAA CTTGCAAAAA 
    ATGGCTTCCA AGGCTTTGAT TCTGTTAGGT CTCTTCTCAG TTCTTCTCGT 
    CGTCTCCGAA GTGTCTGCCG CAAGGCAATC GGGCATGGTG AAGCCAGAGA 
    GTGAGGAAAC TGTGCAACCT GAAGGTTATG GCGGTGGCCA CGGAGGACAT 
    GGTGGTCACG GAGGGGGAGG AGGCCACGGA CATGGAGGAC ACAACGGAGG 
    AGGGGGCCAC GGACTTGACG GATACGGAGG AGGTGGAGGA CACTATGGAG 
    GAGGTGGAGG ACACTACGGA GGAGGTGGAG GACACTACGG AGGAGGTGGA 
    GGACACTACG GAGGAGGTGG AGGACACTAC GGAGGAGGTG GTGGAGGACA 
    CGGAGGTGGA GGACACTACG GAGGTGGTGG AGGAGGATAC GGAGGTGGAG 
    GAGGACACCA CGGAGGAGGA GGCCACGGGC TAAACGAACC TGTTCAGACT 
    AAGCCGGGTG TTTAAAACTA TATAATATCT TCACTACCAT GCATGATTGC 
    ATATATATAT ATACGCTTAT GTATTATCTA TATGCCTATA AATAAACCAT 
    GGTGAGTTTG TAACGCANTG CCTTCAGAAA TGTTCGGAAT AAATTTCCAT 
    AATATTAGNA TAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT2G05440.2 [+] show detail - GLYCINE RICH PROTEIN 9
      E-value: 0; Score: 99.69

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL14-53-K08 - 3 prime EST 
    GGATTAATAA CATCCGAATC CAAATTAAGG TAGTCATCGG ATAAAAATTC 
    ACTAAAATTC TAAATTTAGA AAAGCCACGA CCACATAAAG ACAAGGAGAT 
    AGAAGAGAGG CATGACGGGC TTATACATTC CTATACACAT AAAAGAGAGA 
    AAATAAAAAG AGAAATTTCG GATTCCTTCT CATTCTAATC AAGAAGAGAG 
    GTTGTTTGAA GAGTTTGACT TGTCAAGAAT TGACCACATG ACGAGGACAT 
    CTTCATAACC ACAAGCCATG ACATCACCTT GAAGCTCCTG TACCGTTCGT 
    TTCTCATGTT CTTCTCTCGC CTTTGCGTTT GGGTGGCGGT TCGTTTGCTG 
    GGGTTGGTTC AAGAACGTTG CCGCTTTCTT GAATGGTGTT GGGATCGTTT 
    TCTTCCATGA AGCCATTTTT TATGC

    Gene models with high sequence identity

    1. AT1G48330.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); ...
      E-value: 0; Score: 98.35

    AT1G48330.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT2G05440.2

    Model type
    Protein coding
    Short Description
    GLYCINE RICH PROTEIN 9
    Computational Description
    GLYCINE RICH PROTEIN 9 (GRP9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT2G05510.6); Has 147102 Blast hits to 34686 proteins in 2088 species: Archae - 221; Bacteria - 46389; Metazoa - 53492; Fungi - 9205; Plants - 13312; Viruses - 1624; Other Eukaryotes - 22859 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR