F18329

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18329

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18329

Determination of introduced cDNA(s)

  • RAFL09-38-M02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-38-M02 - Resource: pda06193

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-38-M02 - full reading 
    GACTGCGAAT GAAGTTTAAT GGCGACTAGA TCGCCTTATA AGAGACAAAC 
    GAAGCGATCC ATGATTCAGT CTCTTCCAGC TTCTTCTTCT GCATCATCTC 
    GCCGCCGATT CATTTCTCGG AAGAGGTTCG CGATGATGAT TCCTCTTGCT 
    CTCCTCTCCG GCGCCGTTTT CCTATTCTTT ATGCCATTCA ATAGCTGGGG 
    CCAATCATCT GGTTCTTCTC TGGATCTCTC CCATAGGATC AATGAAATTG 
    AAGTAGTTGC TGAGTTTCCT CATGATCCGG ACGCCTTTAC TCAGGGTCTT 
    CTTTATGCGG GAAACGATAC ACTGTTCGAA TCCACTGGTC TATACGGGAA 
    GTCTTCAGTG AGGAAAGTGG ATCTACGAAC AGGAAAGGTT GAAATTCTTG 
    AAAAAATGGA CAATACATAT TTTGGAGAGG GTTTAACACT CCTTGGAGAA 
    AGGCTCTTTC AAGTCGCATG GTTGACAAAC ACGGGTTTCA CATATGACCT 
    TCGCAACTTA AGTAAAGTAA AACCATTTAA ACATCATATG AAAGATGGAT 
    GGGGACTGGC TACCGATGGA AAAGCGTTAT TTGGAAGTGA TGGCACTTCT 
    ACATTATATC GGATGGACCC TCAAACAATG AAAGTTACTG ATAAGCATAT 
    AGTCAGATAT AATGGCCGTG AGGTACGTTA CCTTAATGAG CTCGAGTACA 
    TAAACAACGA AGTTTGGGCA AATGTGTGGC AGTCTGATTG TATTGCTAGA 
    ATTTCACCCA AGGACGGATC TCTGCTTGGA TGGATACTGC TTTCAAAATT 
    AAGTCGGGGA TTGCTGAAAT CTGGACATAG GGGTATTGAT GTTTTGAATG 
    GCATAGCATG GGACAGTGAC AAGCAACGCC TCTTTGGTAA TAAATCTTGT 
    TATCATCCCC TCTAGGCTTG ATTACTCGAC GTCGCCTCAT AGTCACAACA 
    TTTTGTGTCT CCATCAATTT TGTGTCTCGA TCATTTGTTT TGCAGTAACG 
    GGGAAACTGT GGCCAAAGCT GTACCAAATC AAGCTAAAAC AAGCATCAGC 
    AAAGAGCGGA AATTATATCG AGCAACAATG CTTGGTATGA AAATATTGCG 
    CTTGGTAATG GTTAGAATGT ATACTGGCTA TAATTTACCA TAATTTCTGA 
    ACATTAGCAT TTAGCAAACT TCAATGATTG AAGATGAGAA CCAAAAAAAA 
    AAAAAAAA

    Gene models with high sequence identity

    1. AT4G25720.2 [+] show detail - glutaminyl cyclase
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Nitrous oxide reductase, N-terminal 3.5e-13
    HMMPfam Glutamine cyclotransferase 1.2e-62

    See the detailed result >

    AT4G25720.2

    Model type
    Protein coding
    Short Description
    glutaminyl cyclase
    Curator Summary
    This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus, but, based on in vitro assays (using a truncated form of the protein that lacks a signal peptide), the protein encoded by this gene model does not have enzymatic activity (Schilling 2007).
    Computational Description
    glutaminyl cyclase (QC); FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity, catalytic activity; INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788), Nitrous oxide reductase, N-terminal (InterPro:IPR011045); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR