F17501

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17501

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17501

Determination of introduced cDNA(s)

  • RAFL09-18-G10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-18-G10 - Resource: pdz87806

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-18-G10 - 5 prime EST 
    GATCGGGAGA AAGAGAGAGA GAGAGACGAA GAAAGACAGA GAGAGAGAGA 
    GAGAGAGAGA GAGAGAGAGA GTGAGAGAGA TAGCTCTCTG GCTGATCTTT 
    TTTTTTTCCG ATCAGATCGA AGAGTTTTTA TCTCGTAATT CGAACTTTTT 
    ATTTGGTTTC TCTGACTTAG AGATCTCCAA GCTTCACGTA ATTTGCTGTC 
    GAAGAAGATC TATCGATTCC ACGAATTTGG TGACTTCTGC CGATTCTCCC 
    GTTTGAATTC TGTGGAATTC GCTGAGAAAA GTTGCGGCGG AGGCTGATTT 
    AGGTTAAATC GAGCAGAATT TGACCAAATT CGAGGATTTT TATCGGTAAA 
    AAGATACAGA GAAAGCATAA TTCAGCAACT TCAGAGCTCA ATTCCGCTTC 
    TTCAACCATC GAAAACCACA ATATCTCTTG AATCAGCTGC TACAAGTCGC 
    AGATCTGAGC TGCTAGCCAA TTTTTGCGAT AATTCCCGCG CACAGATTAG 
    TAATAGAATA ATTTAAAAAG AATTCAAAAA CCGTCGAAGC TCTGTCGTTC 
    ATGGAGCTTN CTCAACCTCG TCCCTTCAAA ACCCAAGGGA GAAAACCAAC 
    ACATGATTTT TTATCGCT

    Gene models with high sequence identity

    1. AT5G08130.4 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 0; Score: 99.77

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-18-G10 - 3 prime EST 
    CGAAATCGTT CATGCGCTTT GGTTTAGTCA AATACATAAA AGATATCTAG 
    TATTACATTG AAAACCATAG AACAAAGTAA GAGGAAGAAA CAAATATAAA 
    AAGTGTGAGA TGATCAAGTA TATAAGAGAG TGAAAAATGT TTTCACTTAA 
    CACTGGACGC TTCCAGAAAA CTTTGAAAGC CTTCCTTAAC GATTTATTCC 
    TCAAAAGAGT ATGTTCTAAA ATGCGGTTAG CATAACCGGG TCGCCCTAGT 
    CTTCTTAGGT CTCATACGAT TATGGACCCA CGAGATATAT ATAACAGGAT 
    TTCGGATGTA CAAAAGAAAA AAATCAAAGA TATAACTATA ATAATAAATT 
    ATAATCCCTT TTTGAGATAA AATGATTTAA AGAAAAAAAC AGAGGAATCA 
    ATTTGGGTGT TTAACTTTTA CC

    Gene models with high sequence identity

    1. AT5G08130.5 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 0; Score: 99.52

    AT5G08130.4

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Curator Summary
    Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).
    Computational Description
    BIM1; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1).
    Link
    InterPro Scan - TAIR

    AT5G08130.5

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Curator Summary
    Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).
    Computational Description
    BIM1; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1).
    Link
    InterPro Scan - TAIR