F16408

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16408

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16408

Determination of introduced cDNA(s)

  • RAFL09-33-C23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-33-C23 - Resource: pda05987

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-33-C23 - full reading 
    GAGACTCTTG CTTTTTCACA AAAAAAAAGA AAAAGAGAGA GAGAGCAGCA 
    ACCCCAGCAG CATCGAAGAT CGTCGATCGT CGATCGGTTG CTCTCTTTCA 
    TTAATCAGAT CTAATTGATA CCCAAGCTTC TTCATCGGAG GCCGTATCTC 
    ACGAGGAAAC ATGGGCGGTA GATTTGGAGT CCTCCTAGTC CTCTTCCTCT 
    TGAGCTGGTC TTGTCATGCT ACAAACCCGA TTCTTCTCGA ACCATTCGAA 
    TCAGCTCATG ATGACAACCA AGTCTGTGAA CTATGTGACA AGTATGTCAC 
    GCTAGTCATT GATTACCTTC AAGACTACGA CAACCAGAAT GAACTCGTTG 
    AGGCCCTTCA TATCAGCTGC TCTCAGATTC CTCCTCTCAA AAAACAGTGT 
    CTTTCAATGG TAGATCATTA CACCCAACTT TTCTTCACAC AAGTCTCTAC 
    TATCAAATCA GACCAAATCT GCAAACGGCT TAACCTCTGT CAAGCTGTGA 
    CACCGGCCTT TGCCTCTCAA GTCCATCAAG GAAACTGCGA GGCTTGCCGC 
    GAGACTGTCT CTGAGGTTGT CACCAAACTC AAGGATCCTG AGACTAAGCT 
    GAAGATAATT CGGTTACTTC TCAAGGAATG CAAGTCGCTT AACAATTACC 
    AGGACAAGTG CAAGAAGATG GTATTCGAGT ACGGGCCTCT GATGCTTACG 
    GATTTGCAGA AGTTTCTGGA GAAGAAAGAC GTGTGCACTA TCCTCCACGT 
    CTGTCCAGGT CCAGCCACCC ACCGTGACTA CGTTCCTGCG GTGGAGTCAT 
    TGGCAGATTC GTAAATTCGG CCACCTTGGT TTTGTCGTCA TTCACACTAA 
    TACCATGCCA TGATCGTGAT GCTAATTTAA TTTGGTAACC CGGTGGTCAT 
    GTAAATACTG ATTGATATAT TAAAAACATA ACTACACGAT TGATGATTCT 
    TGTGTGATTT GAAAAGAACG CTGTCTAAAG GCCCATTGTC CATCGATGGG 
    CCTTTTTGCT AATTTCTACA TTGCCCG

    Gene models with high sequence identity

    1. AT5G01800.1 [+] show detail - saposin B domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SAPOSIN-RELATED 2.7e-53
    HMMPanther SAPOSIN-RELATED 2.7e-53
    ProfileScan Saposin B 13.948
    ProfileScan Saposin B 13.995
    superfamily Saposin-like 2.3e-18
    superfamily Saposin-like 3.3e-15
    HMMPfam Saposin-like type B, 2 6.2e-06
    HMMPfam Saposin-like type B, 2 8.8e-10
    HMMPfam Saposin-like type B, 1 3.6e-06
    HMMPfam Saposin-like type B, 1 7.8e-07
    HMMSmart Saposin B 4.1e-16
    HMMSmart Saposin B 2.8e-19
    Gene3D Saposin-like 4.9e-12
    Gene3D Saposin-like 3.7e-15

    See the detailed result >

    AT5G01800.1

    Model type
    Protein coding
    Short Description
    saposin B domain-containing protein
    Computational Description
    saposin B domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139), Saposin-like (InterPro:IPR011001), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138); BEST Arabidopsis thaliana protein match is: saposin B domain-containing protein (TAIR:AT3G51730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR