F15329

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15329

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15329

Determination of introduced cDNA(s)

  • RAFL04-17-N02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-N02 - Resource: pda16990

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-N02 - full reading 
    CCCCCGGGAG GAAGACCAAA TCGGGTTCGG GTCGAGATTG TTTGGTTCGT 
    TGTGTTTCCC CTTTCTCTCT CTCTCCCTCT TTCCCCCTTA CGTAACCCTA 
    AGCGGACGGA GCAATGCTCT GCTAGATCTA TCTTTCTTTC AATTCTTCAC 
    CAGAGATCGT CGAGACTCAC CATTGAAATC GAAGAAACAG CACCAATTTC 
    CACTTCACCA CCGAAAGAGA GAGACAGAGA GGATAATAAA AGGCCGCCAT 
    GGATTTAGAT CAATGGATTT CCAAGGTTAA AGACGGCCAA CATCTCTCTG 
    AGGACGAGCT TCAACTTCTC TGCGAATACG TGAAAGAAAT TCTTATTGAG 
    GAATCAAATG TACAACCTGT CAACAGTCCT GTCACCGTCT GTGGTGATAT 
    CCATGGCCAG TTTCATGATC TTATGAAACT TTTCCAGACC GGAGGTCATT 
    TTCCCGAGAC CAATTACATA TTTATGGGGG ATTTCGTTGA TAGAGGTTAC 
    AACAGTCTTG AAGTTTTCAC CATTCTTTTG CTTCTTAAAG CAAGACATCC 
    AGCCAATATC ACTCTTTTGC GTGGAAATCA TGAAAGTAGA CAGCTAACTC 
    AGGTGTATGG TTTCTATGAC GAATGCCAAA GGAAGTATGG TAATGCTAAT 
    GCTTGGAGAT ATTGCACGGA TGTTTTTGAC TATCTTACAC TTTCAGCTAT 
    TATAGATGGC ACTGTTCTAT GTGTTCATGG TGGCCTTTCA CCTGATGTAC 
    GGACAATTGA CCAGATAAGA TTGATTGAGC GGAATTGCGA AATACCGCAT 
    GAAGGACCCT TCTGTGATCT TATGTGGAGT GATCCTGAAG ATATTGAAAC 
    ATGGGCTGTC AGTCCACGTG GAGCTGGTTG GCTTTTCGGG TCCAGGGTTA 
    CCACTGAGTT TAACCATATT AACAATCTTG ATCTAGTATG TCGCGCTCAC 
    CAGCTTGTAC AAGAAGGTCT CAAGTACATG TTCCAAGATA AAGGTCTTGT 
    AACTGTGTGG TCTGCGCCTA ATTACTGCTA CCGTTGTGGG AATGTGGCTT 
    CTATATTGAG TTTCAATGAC AACATGGAAA GGGAAGTGAA GTTCTTCACG 
    GAGACAGAAG AGAACAATCA AATGAGAGGG CCAAGGACAG GTGTTCCTTA 
    TTTCCTGTGA TTCATGATGA TGATCCTACA TCATTATTAG TCTCGTATTG 
    CTCTTATCAA GTTAGCCATT ATCATGATTG CCATTGGCTT ATGTTCTTTC 
    AAGGTATATC TTCTGATGTT GTTTACACTT CCATTGTTTT TTTTTTCCTT 
    TTTCCATTTT GGAAACATTT TCTTGTGAAA GTGAATGTCA CTTTGGTAAT 
    TTTAGTGGTT TTGATGCACT TCAAAAAAAA AA

    Gene models with high sequence identity

    1. AT1G50370.1 [+] show detail - Calcineurin-like metallo-phosphoesterase superfamily protein
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Metallo-dependent phosphatases 9.6e-123
    HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE 6 (PP6) 1.5e-231
    HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.5e-231
    HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2.1e-134
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 6.7e-85
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 6.7e-85
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 6.7e-85
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 6.7e-85
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 6.7e-85
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 6.7e-85
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 6.7e-85
    PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0
    Gene3D no description 1.1e-118
    HMMPfam Metallophosphoesterase 2.1e-44

    See the detailed result >

    AT1G50370.1

    Model type
    Protein coding
    Short Description
    Calcineurin-like metallo-phosphoesterase superfamily protein
    Computational Description
    Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: flower-specific, phytochrome-associated protein phosphatase 3 (TAIR:AT3G19980.1); Has 6872 Blast hits to 6704 proteins in 524 species: Archae - 81; Bacteria - 295; Metazoa - 2372; Fungi - 1410; Plants - 974; Viruses - 10; Other Eukaryotes - 1730 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR