F13746

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13746

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13746

Determination of introduced cDNA(s)

  • RAFL05-19-B14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-B14 - Resource: pda02773

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-19-B14 - full reading 
    AGGGTTTCCT CTTCCGCATT CGTCGTCTTC AGCTCCTCCT ACACAGTTTC 
    TTCTCTGAAT CTACTTAGGA AGCTAAAATG GGTAGATGTC CGACTAGAAA 
    AGTGAAGAAG AGGAGATTAT CTCACAAAAC AGCTCGCCGT GACAAATTCG 
    AAGTCAAAGG CGATGACTTG GTTTACACAG AGTTGCGTAA ACCGGAGACG 
    GAGATTAAGC CGTTACAGCT TGACGAGGAT TTGCCTGGAA TGGGTCAATT 
    CTACTGCTTA CACTGCGATC GATACTTCTC CAACGTATCA GTGAGGGATG 
    ATCATTTCAA GACTAAGAAA CACAAGAAGC GTGTGAATAT GATGATGGGA 
    CAAGCGCCAC ACTCGCAACT CGATGCAGAT TTAGCCGGGG GAATGGGGAT 
    GCCGGACAAT GGCCCAAAGC TGATGTCTAA TTTGGTATTC ACAGAGTTGC 
    GTAAACCAGA GACGGAGGAT TTACCTGGAA TGGGTCAATT CAACTGCTTA 
    CTCTGCCATC GGAACTTCTC CAATGCATCA GTGATGGATT ATCATTTCAA 
    GACTAAGAAA CACAAAAAGC GTGTGAAGAA GATAGAGCGA CCAGCGCCAC 
    ACTCGCAACT CGATGCAGAT TTAGCTGGTG GAATGGGAAT GCCAGACAAT 
    GGTCCAAAGC TGATGTCTGC CTGAGTTTTT ACAGTTATTT TCCTTATTTA 
    GTTAATGGAA CCCGAAATTT TGTTGTAAAA CTATAATCTC CTAAATTAAT 
    GATACAGGTT TTTTGTCTGT TGCCGAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT2G36930.1 [+] show detail - zinc finger (C2H2 type) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, C2H2-type 8.517
    PatternScan Zinc finger, C2H2-type 0
    PatternScan Zinc finger, C2H2-type 0
    superfamily C2H2 and C2HC zinc fingers 1.6e-05
    superfamily C2H2 and C2HC zinc fingers 0.0054
    HMMPfam zf-C2H2_jaz 1.2e-09
    HMMPfam zf-C2H2_jaz 1.9e-07
    HMMPanther ZINC FINGER PROTEIN 593-RELATED 2.5e-93
    HMMPanther ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593- 2.5e-93
    HMMSmart Zinc finger, U1-type 1.5e-11
    HMMSmart Zinc finger, C2H2-like 14
    HMMSmart Zinc finger, U1-type 1.7e-05
    HMMSmart Zinc finger, C2H2-like 7.3

    See the detailed result >

    AT2G36930.1

    Model type
    Protein coding
    Short Description
    zinc finger (C2H2 type) family protein
    Computational Description
    zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); Has 726 Blast hits to 418 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 301; Fungi - 225; Plants - 112; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR