F13450

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13450

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13450

Determination of introduced cDNA(s)

  • RAFL09-49-J06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-J06 - Resource: pda08428

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-J06 - full reading 
    ACCAATTAGT GGAAATAATG GAGCAAGCCA CTACACTCTT CATATTGCTT 
    TCCACTCTCC TCCTCGCCGT CTCCGTTGAG TCTCCTCAGC CACCGCTATT 
    TCCCGATGAA GCTCTCCCCA CTAAATCTGG CTACCTCCCG GTTAAACCCG 
    CACCCGGCTC GTCCATGTTC TATGCCTTCT ACGAAGCCCA AGAGCCAACC 
    ACACCTCTTC CTGACACTCC GCTCCTCGTT TGGCTCCAAG GTGGGCCAGG 
    CTGCTCTTCA ATGATTGGCA ACTTTTACGA GCTCGGTCCC TGGCGTGTAG 
    TTTCACGCGC CACAGACCTC GAGCGCAACC CCGGCGCATG GAACCGTCTA 
    TTCGGACTAC TTTTTGTGGA TAACCCAATA GGAGTCGGAT TCAGCATCGC 
    AGCCTCACAA CAAGACATAC CCACAAATCA GAGACAGGTC GCTGAGCATC 
    TTTACGCCGC TCTCGTGGAG TTCCTTGAAC AAAACCCAAG CTTCGAAAAC 
    CGACCGGTTT ACTTCACTGG AGAGAGCTAC GCCGGGAAGT ACGTTCCAGC 
    CATTGGATAC TATATCCTTA AAGAGAAACC CAATGGGAAA GTGAATCTAA 
    AGGGGCTAGC CATTGGAAAC GGGCTGACCG ACCCGGTGAC CCAGGTTCAA 
    ACCCATGCGG TCAACGTCTA CTACTCGGGT CTGGTCAACG CAAAACAGAG 
    AGTTGAACTG CAAAAAGCGC AGGAGATATC TGTAGCTCTC GTGAAGTCCC 
    AGAAATGGCG TGAAGCAGCA GACGCGAGGA CCGAACTGTT GACGCTACTA 
    AGTAACATGA CAGGACTCGC GACGCTCTAC AACACGGCAC GGGCGATTCC 
    ATACAGAACA GACCTCGTGG TGGACCTCTT GAACCAGAGA GAAGCAAAAC 
    GTGTTTTGGG AGTGAGTGAA ACGGTTCGTT TTGAGGAATG TAGTGATGAA 
    GTAGAAGATG TGTTGCGGGC AGACGTGATG AAGAGCGTAA AGTTCATGGT 
    GGAGTACGCA TTGGAGAGGA CTCAAGTCTT GCTGTATCAA GGTATGCTTG 
    ATCTAAGAGA CGGCGTCGTT TCGACGGAGG AGTGGATGAA GACTATGAAC 
    TGGTCAGGAT TGGGAATGTT CTCGACGGCG GAGAGGCGTG TGTGGAAGGA 
    TGAAGACGGT GTGGTCGCTG GTTATGTTCA GAGATGGGGG AATTTGTGCC 
    ACGTGGCGGT TACAGGAGCT GGTCATTTTG TTCCGACAGA TAAAGCTGTG 
    AATTCAAGGG ATATGATTGA AGGTTGGGTT TTGGGGAAAG GATTGTTCGG 
    TGGTAAAGAT GTGAAGCAGA CAACTTCGTC GAGCTTATAC CATTCAATCT 
    AAATATTGTG TACTTGTACT TAGTTCTGTA AGATTCAATT CAGATTCTAA 
    TTGTACTCTG GATTTAGATT TGTTACGTCA TGTTCACAAG TTCATTTTAG 
    TACGAATTGG TAACTTTTGC T

    Gene models with high sequence identity

    1. AT1G15000.1 [+] show detail - serine carboxypeptidase-like 50
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidase S10, serine carboxypeptidase 3.4e-18
    FPrintScan Peptidase S10, serine carboxypeptidase 3.4e-18
    FPrintScan Peptidase S10, serine carboxypeptidase 3.4e-18
    FPrintScan Peptidase S10, serine carboxypeptidase 3.4e-18
    Gene3D no description 5.5e-108
    HMMPanther SERINE CARBOXYPEPTIDASE CPVL/CARBOXYPEPTIDASE 7.7e-171
    HMMPanther Peptidase S10, serine carboxypeptidase 7.7e-171
    superfamily alpha/beta-Hydrolases 3e-110
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    HMMPfam Peptidase S10, serine carboxypeptidase 1.2e-102

    See the detailed result >

    AT1G15000.1

    Model type
    Protein coding
    Short Description
    serine carboxypeptidase-like 50
    Computational Description
    serine carboxypeptidase-like 50 (scpl50); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 47 (TAIR:AT5G22980.1); Has 3616 Blast hits to 3489 proteins in 407 species: Archae - 0; Bacteria - 288; Metazoa - 703; Fungi - 860; Plants - 1378; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR