F12448

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12448

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12448

Determination of introduced cDNA(s)

RAFL19-59-D10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-59-D10 - Resource: pda20189

full reading [+] show sequence

CTTCAGATTT GAAATGGTGT CGTTCAAGGT CTCTCTCGTC TCTACTTCGC 
CTATTGATGG CCAGAAACCT GGGACTTCTG GACTCCGTAA GAAGGTGAAA 
GTGTTTAAGC AACCAAATTA CCTTGAAAAT TTTGTCCAGG CAACGTTCAA 
TGCTCTTACT ACAGAGAAAG TTAAAGGTGC GACACTTGTG GTTTCTGGTG 
ATGGTCGTTA TTATTCAGAG CAAGCTATTC AGATTATAGT AAAGATGGCA 
GCAGCTAATG GTGTTAGACG TGTGTGGGTT GGTCAAAACA GTCTGCTATC 
AACTCCTGCA GTATCAGCTA TTATTCGTGA AAGAGTAGGG GCTGATGGAT 
CTAAAGCCAC AGGAGCATTT ATCTTAACAG CAAGTCATAA TCCTGGTGGC 
CCAACTGAGG ATTTCGGAAT TAAGTACAAT ATGGAAAATG GTGGACCAGC 
TCCTGAATCA ATCACTGATA AGATTTACGA GAACACAAAG ACAATCAAGG 
AGTACCCAAT AGCGGAAGAT CTACCCAGGG TTGATATTTC TACTATTGGT 
ATAACCAGCT TTGAAGGACC TGAAGGAAAG TTTGACGTCG AAGTTTTTGA 
TTCTGCAGAT GACTATGTTA AACTAATGAA GTCAATCTTC GACTTTGAAT 
CCATCAAGAA ATTGCTATCT TATCCAAAAT TTACTTTCTG CTATGATGCA 
TTGCATGGAG TGGCTGGAGC ATATGCACAT CGCATCTTTG TCGAAGAACT 
AGGTGCACCA GAAAGTTCGT TGTTGAACTG CGTACCCAAG GAGGACTTTG 
GAGGGGGCCA CCCGGATCCC AATCTTACCT ATGCTAAGGA GCTCGTGGCA 
CGCATGGGAT TGAGTAAAAC TGATGATGCT GGTGGCGAGC CTCCAGAGTT 
TGGCGCCGCT GCTGATGGTG ATGCAGACCG AAACATGATC CTCGGTAAAA 
GGTTTTTCGT AACTCCTTCG GATTCAGTTG CTATAATTGC TGCAAATGCT 
GTTGGGGCCA TACCATACTT CAGCTCTGGT TTAAAAGGTG TTGCTAGGAG 
CATGCCGACC TCAGCTGCAC TTGATGTCGT TGCAAAAAAC TTGGGTTTGA 
AGTTCTTTGA GGTTCCAACA GGCTGGAAAT TCTTTGGCAA TCTAATGGAT 
GCTGGGATGT GCTCTGTATG CGGAGAAGAA AGTTTTGGAA CCGGTTCGGA 
TCATATCCGT GAGAAAGATG GGATCTGGGC AGTTCTTGCT TGGCTATCAA 
TACTGGCTCA CAAGAACAAG GAAACCCTTG ATGGGAATGC AAAACTGGTG 
ACGGTTGAAG ACATTGTCCG CCAGCACTGG GCTACATATG GCCGTCACTA 
TTACACTCGA TACGACTATG AGAACGTAGA CGCAACTGCA GCTAAAGAAC 
TCATGGGACT TTTGGTTAAG TTGCAATCTT CACTTCCCGA AGTCAACAAG 
ATTATAAAGG GAATTCATCC AGAGGTGGCA AATGTTGCAA GCGCAGATGA 
GTTCGAGTAC AAAGATCCAG TAGATGGCTC TGTTTCAAAG CACCAAGGGA 
TCCGATACTT ATTCGAGGAT GGATCACGAC TTGTGTTCCG TCTCTCGGGA 
ACTGGCTCAG AAGGAGCAAC AATAAGGCTA TACATTGAAC AATACGAGAA 
GGACGCCTCA AAGATCGGCC GAGATTCTCA GGATGCTCTT GGTCCCCTGG 
TTGATGTTGC ATTAAAGCTG TCGAAAATGC AAGAGTTCAC CGGCCGATCA 
TCACCAACTG TTATTACATA AGACAGCTTT CAGAAGACGC TGTCTCCAAT 
ACTACTCTCA TTCCAACTTC ATTTCTTATG AATTTGGGTT TTGCTTTTTT 
CCTGTTATCT GTTATCTTAC ACAAGTATAC TTCAATACAT ATAATTTTAA 
TGGAATATAC ATTAGGTTGG CAATTGAAAA AAAAAA

Gene models with high sequence identity

AT1G70730.1 [+] show detail - Phosphoglucomutase/phosphomannomutase family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PHOSPHOGLUCOMUTASE	1.9e-224
HMMPanther	PHOSPHOHEXOMUTASE FAMILY MEMBER	1.9e-224
PatternScan	Alpha-D-phosphohexomutase, conserved site	0
HMMPfam	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	3.3e-36
HMMPfam	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	2.7e-26
HMMPfam	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	3.1e-12
HMMPfam	Alpha-D-phosphohexomutase, C-terminal	5.3e-11
superfamily	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	1.2e-53
superfamily	Phosphoglucomutase, C-terminal domain	2.4e-53
superfamily	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	2.5e-40
superfamily	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	5.9e-36
Gene3D	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	1.4e-58
Gene3D	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	1.8e-40
Gene3D	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	1.5e-37
Gene3D	no description	2.6e-60
FPrintScan	Alpha-D-phosphohexomutase, N-terminal	3e-22
FPrintScan	Alpha-D-phosphohexomutase, N-terminal	3e-22
FPrintScan	Alpha-D-phosphohexomutase, N-terminal	3e-22
FPrintScan	Alpha-D-phosphohexomutase, N-terminal	3e-22

See the detailed result >

AT1G70730.1

Model type: Protein coding
Short Description: Phosphoglucomutase/phosphomannomutase family protein
Curator Summary: Encodes a cytosolic phosphoglucomutase (PGM). Two Arabidopsis PGM proteins (AT1G70730/PGM2 and AT1G23190/PGM3) have high sequence similarities and redundant functions. Mature plants possessing a single cPGM allele had a major reduction in cPGM activity. Whereas pgm2 and pgm3 single mutants are undistinguishable from the wild type, loss of both PGM2 and PGM3 severely impairs male and female gametophyte development.
Computational Description: Phosphoglucomutase/phosphomannomutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: Phosphoglucomutase/phosphomannomutase family protein (TAIR:AT1G23190.1); Has 8013 Blast hits to 8000 proteins in 2264 species: Archae - 118; Bacteria - 6090; Metazoa - 518; Fungi - 215; Plants - 166; Viruses - 0; Other Eukaryotes - 906 (source: NCBI BLink).
Link: InterPro Scan - TAIR