F12023

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12023

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F12023

Determination of introduced cDNA(s)

  • RAFL09-31-E08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-31-E08 - Resource: pda05839

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-31-E08 - full reading 
    ATCTCCAAAC CAAAACACAA TTAAGCTAAA AAAAAAAACC AAAGGATGTC 
    TCAGAAACTC ATGTTCTTGT TCACCCTTGC CTGCCTCTCC TCGTTACCAT 
    CTCCTTTTAT CTCCGCCCAA ATACCGGCCA TTGGAAATGC CACTTCACCG 
    TCAAATATAT GTAGATTCGC GCCGGATCCA TCTTATTGTA GATCGGTTCT 
    TCCAAACCAG CCCGGAGATA TATATTCCTA CGGACGTTTG TCTCTACGAA 
    GATCCCTCTC ACGAGCCCGC CGGTTCATTT CGATGATCGA CGCTGAACTT 
    GACCGGAAAG GCAAAGTGGC TGCTAAATCC ACAGTAGGGG CTCTCGAAGA 
    CTGCAAATTC CTAGCCAGCC TGACTATGGA CTACCTCCTT AGTAGCTCAC 
    AGACGGCTGA TTCCACCAAA ACACTGTCGT TATCTAGGGC CGAGGATGTT 
    CATACATTTC TGAGTGCTGC CATCACCAAT GAGCAGACTT GTCTTGAAGG 
    ACTTAAATCA ACGGCGTCCG AAAATGGTCT TTCCGGTGAT CTTTTCAACG 
    ATACAAAACT CTATGGGGTG TCTCTTGCCC TTTTCTCCAA GGTTGGGTGC 
    CAAGAAGGCA AAGATCGAGA CCGATTTGGC AACCACAAGC CAGGTTCAAA 
    AAGTTTTTTG GTTTCCGTAA CGGTAAATTA CCGTTAAAGA TGACGGAAAG 
    GGCACGTGCC GTTTACAACA CCGTGACTAG AAGAAAGCTT CTCCAATCGG 
    ATGCAGACGC CGTTCAGGTG AGCGACATTG TGACGGTGAT CCAGAACGGG 
    ACGGGAAACT TCACGACCAT AAACGCCGCC ATTGCAGCTG CACCAAATAA 
    AACTGACGGT AGTAACGGTT ACTTCTTGAT CTACGTAACG GCGGGATTGT 
    ACGAGGAATA CGTGGAAGTT CCCAAGAACA AGAGATATGT GATGATGATC 
    GGTGACGGCA TCAACCAGAC CGTTATCACC GGAAACAGGA GTGTCGTTGA 
    TGGATGGACA ACTTTCAATT CAGCCACATT TATTCTATCA GGTCCCAACT 
    TTATTGGTGT AAACATAACA ATCCGCAATA CGGCAGGACC AACCAAAGGC 
    CAAGCTGTGG CATTGAGGAG TGGTGGGGAC TTGTCTGTTT TCTACAGTTG 
    TAGTTTTGAA GCCTATCAAG ACACGTTATA CACACATTCT CTCAGACAGT 
    TTTATCGTGA ATGTGATGTC TATGGTACTG TTGATTTTAT ATTTGGTAAC 
    GCTGCAGTGG TATTACAAAA CTGTAATTTG TATCCACGTC AACCTCGCAA 
    AGGTCAATCG AACGAGGTTA CGGCTCAAGG TCGTACTTAT CCGAACCAAA 
    ACACTGGGAC GGCAATTCAT GGTTGTACTA TAAGACCGGC AGATGATTTG 
    GCTACGAGCA ACTATACAGT GAAGACTTAT CTTGGTCGAC CATGGAAGGA 
    ATATTCTAGA ACCGTTGTCA TGCAAACTTA CATAGACGGG TTTCTAGAAC 
    CGAGTGGTTG GAATGCATGG TCTGGTGATT TTGCATTGAG CACACTTTAC 
    TACGCGGAAT ATAATAATAC CGGACCTGGT TCTGACACGA CAAACCGAGT 
    CACTTGGCCT GGTTATCACG TCATCAACGC AACTGATGCT TCCAATTTCA 
    CGGTCACCAA TTTCCTTGTT GGTGAAGGTT GGATTGGACA AACCGGAGTG 
    CCTTTCGTGG GTGGACTGAT CGCATAATCA ACCAACCTTA TACTATATAT 
    GATATGTTAA TTAGTTAAAT TATTTAATCA TTCATGTGTT GTTTTTTTAA 
    TCAAATAATT ATTTAGTGGT GCCTGATTCA ATACGATTTG TAATAACTTT 
    AACTTACTAT TGTACAACCG AATGGTTTTC TTCGAAATCT AATAATAATG 
    AACGGGTAAT CAG

    Gene models with high sequence identity

    1. AT2G47550.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
      E-value: 0; Score: 99.84

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Pectinesterase, active site 0
    HMMPfam Pectinesterase inhibitor 1.4e-25
    HMMPfam Pectinesterase, catalytic 2.5e-133
    HMMSmart Pectinesterase inhibitor 1.5e-27
    HMMTigr Pectinesterase inhibitor 0.00027
    Gene3D Pectin lyase fold 2.1e-120
    superfamily Pectinesterase inhibitor 8.7e-09
    superfamily Pectin lyase fold/virulence factor 8.2e-111

    See the detailed result >

    AT2G47550.1

    Model type
    Protein coding
    Short Description
    Plant invertase/pectin methylesterase inhibitor superfamily
    Computational Description
    Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02330.1); Has 2676 Blast hits to 2617 proteins in 319 species: Archae - 6; Bacteria - 600; Metazoa - 1; Fungi - 202; Plants - 1841; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR