F11113

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11113

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11113

Determination of introduced cDNA(s)

  • RAFL05-13-F21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-F21 - Resource: pda12230

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-F21 - full reading 
    GATAAGCCAC ATTTCTTCTC TCTTTCTCTC CTACACAACA CAGCTTTTTA 
    AACCCAACAG AGCAAAAAAG CAAAAGATTC AACAAAAATC TCCTCAAATT 
    CTATTCATGG TCTCTAGAAA TTCTGACGGA TATTTCTTGG ATCCGACCGG 
    TATGACTGTT CCTGGTCTCG GACCTTCCTT TACAGCCGCC GTTTCTTCTT 
    CTTCTTCACC AACGACTTCT TCTACGGCCG TGGCTGTGGC GGATGTGACG 
    GCGATGGTTT CTTCTTCGGA GGAGGATTTG AGTAAGAAGA TTAGGAAGCC 
    TTATACTATT ACTAAGTCTA GAGAGAGCTG GACGGAGCCT GAGCATGATA 
    AATTCCTTGA AGCTCTTCAA TTGTTTGATA GAGACTGGAA GAAGATTGAA 
    GCTTTTATTG GTTCAAAGAC AGTGATTCAG ATACGAAGTC ATGCTCAGAA 
    GTATTTTCTT AAGGTACAAA AGAGTGGGAC CGGTGAACAT CTCCCTCCTC 
    CTCGACCTAA AAGGAAAGCC GCTCATCCAT ATCCTCAGAA GGCTCACAAG 
    AATGTGCAAC TGCAAGTACC AGGGTCATTC AAGTCAACAT CTGAACCAAA 
    TGACCCAAGT TTTATGTTTA GGCCTGAGTC TTCTTCAATG CTGATGACTT 
    CGCCAACCAC TGCTGCTGCG GCTCCATGGA CAAATAATGC GCAAACAATT 
    AGCTTCACTC CCCTCCCAAA AGCAGGAGCA GGAGCTAATA ACAATTGTTC 
    TAGTAGTTCT GAAAATACTC CAAGACCACG ATCCAACAGG GACGCAAGAG 
    ACCATGGAAA TGTTGGCCAT TCATTAAGAG TTTTACCGGA CTTTGCCCAA 
    GTATACGGCT TCATTGGAAG TGTGTTTGAC CCATATGCAA GTAATCATCT 
    ACAAAAGCTG AAGAAGATGG ACCCCATAGA TGTTGAAACA GTGTTACTAT 
    TGATGAGAAA TCTATCCATC AACTTGTCTA GTCCTGACTT TGAGGATCAT 
    AGACGGCTTC TTTCGTCTTA TGATATCGGA TCTGAGACAG CAACTGATCA 
    TGGTGGAGTG AATAAAACCT TAAACAAAGA CCCACCTGAA ATCTCTACTT 
    AATGTTTAAT AGAAGAGGAG AACTGTGAAA AGTGTCTCAG GTGAGCCAGC 
    CAACAACCAG ATGGCTACAA AATACAGAGA TTCTGTTGTG GTTTTTTGTT 
    TGTACATAGG AAGAAGATGA AGCTGATGTT ACTCGGTTTA GTTGTTGTTA 
    CTGTTATAAA TAGTCTGTTG GGTTAAGGAT GGTATATGTA CAGTGTATTA 
    TCATAAGTTA GATCTCAAGT TTAAACATAT GTATCAGTCT CTTTGATGGG 
    AGACCAAAAT CTCTTAATAG AGTTGTCTTT GCTTTCGTTT TCATTCGTTT 
    ATAGAGGAAG AAATAAGGTG ACTGTGACCA TTTGTATAAC AATATGGATA 
    AACTATTTTT AGTGGCC

    Gene models with high sequence identity

    1. AT5G52660.2 [+] show detail - Homeodomain-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart SANT, DNA-binding 9.6e-10
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 5.2e-27
    superfamily Homeodomain-like 3.3e-15
    HMMPanther SWI/SNF COMPLEX BAF SUBUNIT 2e-05
    HMMPanther SWI/SNF COMPLEX-RELATED 2e-05
    HMMPfam Myb, DNA-binding 8.4e-10
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 13.758

    See the detailed result >

    AT5G52660.2

    Model type
    Protein coding
    Short Description
    Homeodomain-like superfamily protein
    Computational Description
    Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1); Has 1360 Blast hits to 1350 proteins in 120 species: Archae - 0; Bacteria - 4; Metazoa - 93; Fungi - 8; Plants - 1059; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR