F10707

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10707

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10707

Determination of introduced cDNA(s)

  • RAFL06-11-L14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-11-L14 - Resource: pda03086

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-11-L14 - full reading 
    GCTCTTCTTC GTAGTCGCCT TTGAATTCGC AGTTAGAGAT GGATGCTTCA 
    GATTCGTTTT ACTTTTGCTT CCATCATCGG ATCAACTAAG GATTGCAGTT 
    TTTCTGAGTG AGAAGCAATG AAGGTGAGAT CATCTGTGAA GAAGATGTGT 
    GAGTTTTGTA AAACAGTGAA ACGTCGTGGA CGTGTGTATG TTATATGCTC 
    TTCCAATCCT AAGCACAAGC AAAGACAAGG GTTCAGTTCC TTTGCTTATG 
    AAGGAATTAC ACCTTCCCCT TTGTTTGCTG AGCCGATTGC TAGTCAGGAG 
    TTGGTGAGGC TGCCTGGTCA GGGGGTATCA GCCGGACTGG CATCACTTTT 
    ACACAAAAGG CCTATGCCAA CAGCGTATTT CGGATGGAGG TCTGGTCTTG 
    CATCCATTCT CTTCAAACAA GGAAATTAGG ATGTCAGCAT TTCCCTTTTT 
    ATTCTTCAGA TTTGTAATCG CAGTTTTCTT CCAATTCCTA TGAAACATTA 
    TTGTATATCT CTCCACTTTT ACTTTGGTCA GTCGTATGCT CCTTCGAGAC 
    CTGTTTGATT GTGCCTCGCA TGACCTGAAC AAAGAGATAT ATTATG

    Gene models with high sequence identity

    1. AT5G20180.2 [+] show detail - Ribosomal protein L36
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L36 4.9e-22
    BlastProDom Q8W464_ARATH_Q8W464; 1e-11
    PatternScan Ribosomal protein L36 0
    HAMAP Ribosomal protein L36 19.15
    HMMPanther Ribosomal protein L36 4.2e-21
    superfamily Ribosomal protein L36 5.8e-15
    HMMTigr Ribosomal protein L36 3.5e-16

    See the detailed result >

    AT5G20180.2

    Model type
    Protein coding
    Short Description
    Ribosomal protein L36
    Computational Description
    Ribosomal protein L36; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36 (InterPro:IPR000473); Has 4494 Blast hits to 4494 proteins in 2031 species: Archae - 0; Bacteria - 3621; Metazoa - 52; Fungi - 76; Plants - 607; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR