F09918

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09918

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09918

Determination of introduced cDNA(s)

RAFL05-10-N23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-N23 - Resource: pda02496

full reading [+] show sequence

AAAAAAAGGA AAAAAGAAAA AGAAGAAGAG GAGCTAAAAA AACGACGTCG 
TAGAAGGAGA TTCTTGCCAT GGCCACACAT AGTCTCTCCT TCTTCTTCAG 
AGTTCTTCTC CTCCTCTTTC TTACTCTCTC AGAGAGAATT AAAGGGCAAG 
GTGTGGGAAT CAACTACGGC CAAATAGCAA ACAACCTCCC ATCTCCGGCA 
AGAGTCGCCG TGCTCCTTCG ATCACTAAAC ATCACAAGAG TAAAACTCTA 
CGACGCAGAT CCAAACGTCC TCTTCTCCTT CTCAAACTCA CAAGTAGATT 
TCATGATCGG TTTAGGCAAC GAGTATCTTC AAAACATGTC AACAGATCCA 
ACCAAAGCTC AAGATTGGTT ACAACAAAGA CTTGAACCAC ATATCTCAAA 
AACACGAATA ACCTCAATAG TTGTCGGCAA CGAAATCTTC AAAACCAATG 
ATCATGTCCT CATCCAAAGC CTATTACCGG CTATGAAATC GGTTTACGCT 
GCTTTAACCA ATCTTGGTTT AGAGAAACAA GTAACCGTAA CTTCAGCTCA 
TTCTTTAGAC ATTCTTTCAA CATCTTATCC TCCTTCTTCA GGATCATTCA 
AAGAAGAGTT TATTCAATAT CTTCAACCAC TTCTTGATTT TCATTCTCAA 
ATCGAATCAC CTTTCTTGAT AAATGCTTAT CCCTTTTTTG CTTATAAAGA 
TAGTCCTAAA GAAGTTCCAT TAGAGTATGT TTTGTTTCAA CCTAATCAAG 
GTATGGTTGA TCCAAACACT AATCTTCATT ATGACAACAT GTTGTTTGCT 
CAAGTTGATG CGCTTTACTC TGCCATTAAG ACTTTGGGAC ATACCGATAT 
CGAGGTTCGG ATATCGGAAA CCGGTTGGCC TTCTAAAGGA GATGAGAATG 
AGATTGGAGC TTCGCCGGAG AACGCGGCTT TGTATAATGG GAATTTGTTG 
AAGTTGATTC AGCAGAGGAA AGGAACTCCG GCGAAGCAAT CTGTTCCTAT 
TGATGTTTAT GTGTTTGCTC TGTTTAATGA GAATCTTAAA CCGGGTCCGG 
TTTCTGAGAG GAATTATGGA CTTTTTTATC CGGATGGTAA ACCGGTTTAC 
AATGTCGGTA TGCAAGGTTA TTTACCTGAT ATTATCTATA CTTCAAGGGC 
AACTACAATT AAGATTTTGA ATTTGTGGAG AGTCGTGATG GGTTTGGCTG 
TGGCTTGGTT CATACTCGAT ATGGGCGACA AGATGAGGAT GAGATAAGCT 
TCGCTTGTGT CTTTGTCTGT CCTTGTAGGA TTTTTGTTTT AATATGTTAG 
TTGATTATAG GTGAGGTATA CAATTCTTTG TCATGTATTG GATTCACAAA 
AATTAAAAAA ATTAATTTAT TCCT

Gene models with high sequence identity

AT2G27500.1 [+] show detail - Glycosyl hydrolase superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Glycoside hydrolase, subgroup, catalytic core	2.7e-110
superfamily	Glycoside hydrolase, catalytic core	3.9e-104
HMMPfam	Glycoside hydrolase, family 17	1.3e-91

See the detailed result >

AT2G27500.1

Model type: Protein coding
Short Description: Glycosyl hydrolase superfamily protein
Computational Description: Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 2143 Blast hits to 2127 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 12; Plants - 2120; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link: InterPro Scan - TAIR