F09743

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09743

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09743

Determination of introduced cDNA(s)

  • RAFL15-26-A21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-26-A21 - Resource: pda12944

    full reading [+] show sequence

    Nucleotide sequence: RAFL15-26-A21 - full reading 
    ATTTCTCTTT AGTCTCTCTA CGGAACCTGT CTTCTTGTCT TGTCCAAAAT 
    CGGATTTTTA AGAGTACAAG TGAGTTTATT TTGGGGGCCG AAATCTGTCC 
    TGGAGGATAC AGAAGCAAGA TGAAGTTAAT AGATCGAAGA ATGAGGTTAA 
    CGGAGCTGCT CTTACGGTGC TCCATCAGTG TCTTCGCTCT CCTCGCGCTT 
    ATTCTAGTTG TGACAGACAC TGAGGTCAAG CTTATCTTCA CTATCAAGAA 
    GACGGCCAAG TACACGGACA TGAAGGCGGT TGTGTTCTTG GTGGTGGCTA 
    ATGGGATAGC TGCGGTTTAT TCTTTGTTGC AATCAGTTCG TTGCGTGGTG 
    GGTACGATGA AAGGAAAGGT TTTGTTTAGT AAGCCTCTTG CTTGGGCCTT 
    TTTCTCTGGT GATCAGGCGA TGGCGTACTT GAATGTGGCA GCCATTGCAG 
    CAACAGCAGA GTCTGGTGTG ATTGCTAGGG AAGGAGAGGA AGATTTGCAA 
    TGGATGAGAG TGTGTACTAT GTATGGAAAG TTCTGCAACC AAATGGCTAT 
    AGGAGTCTCT AGCGCCTTGT TAGCCTCCAT TGCTATGGTT TTCGTCTCCT 
    GCATTTCTGC CTTTAGTCTC TTCCGCTTGT ACGGTGCCAC CAAAGACCGC 
    AGAACCACGC CGTGGTGAAG TGAATGCGGC TTTGTCTTTA GTAGTGTTGA 
    AAATGTTGTT GTTAAAAAAA CATATAGTAA CAAAAGTGTA GGCTCTTGTT 
    GGTTCTTCTT CTTCTTCTTC TTGATGATGT TATATGTGAC AAACAATATG 
    TAAAACTAGA CTATTGATGT TCTGTGCCAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT4G16442.1 [+] show detail - Uncharacterised protein family (UPF0497)
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Uncharacterised protein family UPF0497, trans-membrane plant subgroup 6.1e-38
    HMMPanther UNCHARACTERIZED 5.5e-53
    HMMPanther NITRATE, FROMATE, IRON DEHYDROGENASE 5.5e-53
    Coil coiled-coil 0
    HMMPfam Uncharacterised protein family UPF0497, trans-membrane plant 1e-43

    See the detailed result >

    AT4G16442.1

    Model type
    Protein coding
    Short Description
    Uncharacterised protein family (UPF0497)
    Computational Description
    Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G35760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR