F09443

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09443

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09443

Determination of introduced cDNA(s)

  • RAFL09-56-K14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-56-K14 - Resource: pda08460

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-56-K14 - full reading 
    ATGCTAGTTC CAAACAAACG GTTTCATTAT CTTCTCCAAT TCCAAATGTG 
    GTGTCTACCA TCTGTTCGAC CAAATGTCTC TGAGATGTTC TTCAAGTCCC 
    CAATGCTCAA ACCCACTGCT AGATTCTCCT CCACTTCGTC TCCCTATCTT 
    CCTCCTTCCT TCAGCGTCGC CCCGATGATG GATTGGACAG ATAATCATTA 
    CCGGACGCTT GCTCGTCTCA TAACAAAGCA CGCTTGGCTT TACACTGAAA 
    TGATTGCAGC TGAAACCCTT GTTCACCAGC AGACCAATTT GGTTCTTAGC 
    GTTTTCTCCC CAACAACATC CTATTGTTCT CCAACTTGGT GGTAGCAATG 
    TGGAAAACCT TGCAAAGGCT GCTAAGCTTT CTGATGCTTA CGGATACGAC 
    GAAATTAATC TCAACTGCGG GTGCCCCAGT CCTAAGGTAG CCGGTCATGG 
    ATGCTTTGGT GTTAGCCTCA TGCTCAAACC TAAGCTTGTT GGAGAGGCAA 
    TGTCTGCCAT TGCTGCCAAT ACCAACGTCC CTGTTACTGT GAAATGTCGA 
    ATTGGTGTAG ACAATCATGA TTCGTATGAT GAGCTCTGTG ACTTTATCTA 
    CAAGGTTTCT ACTCTATCAC CTACCAGACA TTTCATTGTA CATTCACGCA 
    AGGCACTGCT CGGTGGGATA AGCCCTGCTG ATAACCGGAG AATCCCACCT 
    CTAAATTCAG GTATGAGTAT TACTATGCCC TCGTGCGTGA CTTCCCGGAC 
    TTGAGATTCA CTATTAATGG AGGCATTACT TCTGTTTCAA AGGTAAACGC 
    TGCACTGAAG GAAGGAGCTC ATGGAGTCAT GGTAGGACGT GCTGCATACA 
    ACAACCCATG GCAGACGCTA GGACAAGTTG ACACTGCAGT TTATGGTGTA 
    CCAAGCAGTG GCCTTACACG CCGACAGGTT CTTGAGCAAT ATCAAGTATA 
    TGGAGATTCT GTGTTAGGAA CACATGGAAA CGGGAGGCCT AATGTGAGGG 
    ATTTGGTGAA GCCTCTGCTA AACCTTTTCC ATTCAGAAAA TGGAAATAGC 
    TTGTGGAAGC GGAGAGCAGA CGCAGCTTTC AAGGAGTGCA GGAGTGTTGG 
    ATCGTTGCTG GAAGAAAGCT TGAGGGCGAT CCCGGACTGT GTCTTAGATT 
    CACCCATATC TGGGAGTCCA GAGAGCGGAG ACGAAGATGT GTTCGCAGAT 
    GTGCACAATG TATTGCCCCC ACCATACGAA GCTGGAGAAG AAATCATCTT 
    ATGCGCTTAG TTGTCGTTTG TAATCTGTGT TTGTGATTGT CTCTGTCGAT 
    TAAAATTGTA AATTGAACGG GGCTTACTTC AAGTGGTTGT TAGTCTTGGG 
    CTCGTGTATG GGCTTTTTTG TCAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT3G63510.1 [+] show detail - FMN-linked oxidoreductases superfamily protein
      E-value: 0; Score: 99.27

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam tRNA-dihydrouridine synthase 1.8e-09
    HMMPfam tRNA-dihydrouridine synthase 7.7e-14
    HMMPfam tRNA-dihydrouridine synthase 3.3e-30
    HMMPanther TRNA-DIHYDROURIDINE SYNTHASE-RELATED 8.7e-18
    HMMPanther tRNA-dihydrouridine synthase 8.7e-18
    Gene3D Aldolase-type TIM barrel 4.3e-06
    Gene3D Aldolase-type TIM barrel 1.5e-27
    superfamily FMN-linked oxidoreductases 1.4e-08
    superfamily FMN-linked oxidoreductases 8.2e-12
    superfamily FMN-linked oxidoreductases 4.8e-24

    See the detailed result >

    AT3G63510.1

    Model type
    Protein coding
    Short Description
    FMN-linked oxidoreductases superfamily protein
    Computational Description
    FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11920 Blast hits to 11916 proteins in 2583 species: Archae - 58; Bacteria - 8071; Metazoa - 278; Fungi - 218; Plants - 160; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR