F08841

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08841

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08841

Determination of introduced cDNA(s)

RAFL09-82-P19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-82-P19 - Resource: pda08889

full reading [+] show sequence

ATCAAGATCA GAAGACAATT TTTATTTTTC ATCAAGTTTC TTAGATCATC 
AGGTTGATTG ATACTCTAAT CAGTGTGATT GTAAATGGCG TCTAATTCTT 
CTAACGGGAC GACGACGACA AAGCCACCAC CTATGCCGTC TCCTCTGCGT 
AATTCCAAGT TTTTTCAGTC GAATATGAGG ATCTTGGTGA CCGGAGGAGC 
TGGATTCATT GGTTCACATC TCGTTGATAA ATTGATGCAA AACGAAAAGA 
ATGAAGTAAT CGTTGCGGAT AATTACTTCA CAGGATCAAA AGACAATCTC 
AAGAAATGGA TTGGTCATCC AAGATTTGAG CTAATTCGTC ATGATGTGAC 
TGAACCTCTT TTCGTCGAGG TTGATCAAAT CTACCATTTA GCATGTCCCG 
CTTCTCCAAT TTTCTACAAA TACAACCCCG TTAAGACGAT AAAAACAAAT 
GTGATTGGCA CACTTAACAT GTTAGGACTA GCTAAGCGAG TTGGAGCAAG 
AATTTTACTT ACTTCCACAT CTGAAGTGTA TGGTGATCCT TTGGTTCACC 
CTCAAACCGA GAGCTATTGG GGAAATGTAA ACCCGATCGG TGTTAGAAGC 
TGTTATGATG AAGGAAAACG TGTTGCCGAG ACTCTTATGT TTGATTACCA 
TAGGCAACAT GGGATTGAGA TACGCATAGC GAGGATATTC AACACATATG 
GTCCTCGTAT GAACATTGAT GATGGTCGCG TTGTGAGCAA CTTCATTGCT 
CAGGCTCTCA GGGGAGAAGC TCTGACTGTT CAGAAACCGG GAACACAAAC 
CCGCAGTTTC TGTTATGTTT CGGACATGGT GGAAGGTCTA ATGCGTTTGA 
TGGAAGGAGA CCAAACCGGA CCGATAAACA TAGGCAATCC AGGCGAATTC 
ACGATGGTTG AGCTCGCTGA GACGGTTAAA GAGCTTATTA AACCGGACGT 
GGAGATAAAG ATGGTAGAGA ACACACCTGA TGATCCAAGG CAGAGGAAAC 
CAGACATAAG CAAAGCTAAA GAAGTTCTTG GTTGGGAACC AAAGGTGAAG 
CTACGTGAGG GGCTTCCTCT TATGGAAGAA GATTTTCGTC TAAGGCTTGG 
TGTTCCGAAG AAGTAAAACT TATTTTCCAA AAAAAAGAAG AAGAAAAATA 
ATTGCTATTT TAATTTCATG GAATTGTGTG GTCTTATCAT TTTGTTTGTT 
TGTTTGAAAT CGGGGTTCCA AGTCGAAGCA AGTGCACACA TATCCCCGGA 
ACATGTGGAG CATGTCTTTT AATCTTTCTC TTTGCATTTT GAGTTTGTAG 
GAAATAAGCG TCCTAACGAG GAACATTTTA GGGAAGTGAT GTTACGTTAC 
TACTTGAATT TTATTATGAA TGTAATCAGT GAGATGTTTT AAG

Gene models with high sequence identity

AT2G28760.1 [+] show detail - UDP-XYL synthase 6
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	NAD(P)-binding domain	7.69998480533761e-65
superfamily	NAD(P)-binding domain	8.2e-97
HMMPfam	NAD-dependent epimerase/dehydratase	8.60000000000005e-44
HMMPanther	PTHR10366:SF35	0
HMMPanther	PTHR10366	0

See the detailed result >

AT2G28760.1

Model type: Protein coding
Short Description: UDP-XYL synthase 6
Computational Description: UDP-XYL synthase 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 45408 Blast hits to 45356 proteins in 3037 species: Archae - 861; Bacteria - 26677; Metazoa - 782; Fungi - 385; Plants - 1435; Viruses - 88; Other Eukaryotes - 15180 (source: NCBI BLink).
Link: InterPro Scan - TAIR