F08837

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08837

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08837

Determination of introduced cDNA(s)

RAFL09-97-H20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-97-H20 - Resource: pda10029

full reading [+] show sequence

GTCTCTGTTT CTTGTTTCTC TCTCTCTCTC TCTACAGAGT TTTCTTTCCC 
TCGAAGAAAA AGAATATTTT TAAATTTAAT TTTCTCTGCG TTTATAAGCT 
TTAAGTTTCA GAGGAGGAGG ATTTAGAAGG AGGGTTTTGT ATGTGTGTCT 
TAAAAGTGGC AAATCAGGAA GATAACGTTG GCAAAAAAGC CGAGTCTATT 
AGAGACGATG ATCATCGGAC GTTATCTGAA ATCGATCAAT GGCTTTACTT 
ATTCGCAGCC GAAGACGACC ACCACCGTCA TAGCTTCCCT ACGCAGCAGC 
CGCCTCCATC GTCGTCGTCC TCATCTCTTA TCTCAGGTTT CAGTAGAGAG 
ATGGAGATGT CTGCTATTGT CTCTGCTTTG ACTCACGTTG TTGCTGGAAA 
TGTTCCTCAG CATCAACAAG GAGGCGGTGA AGGTAGCGGA GAAGGGACTT 
CGAATTCGTC TTCTTCCTCG GGGCAGAAAA GGAGGAGAGA GGTGGAGGAA 
GGTGGCGCCA AAGCGGTTAA GGCAGCTAAT ACTTTGACGG TTGATCAATA 
TTTCTCCGGT GGTAGCTCTA CTTCTAAAGT GAGAGAAGCT TCGAGTAACA 
TGTCAGGTCC GGGCCCAACA TACGAGTATA CAACTACGGC AACTGCTAGT 
AGCGAAACGT CGTCGTTTAG TGGGGACCAA CCTCGGCGAA GATACAGAGG 
AGTTAGACAA AGACCATGGG GAAAGTGGGC GGCTGAGATT CGAGATCCAT 
TTAAAGCAGC TAGAGTTTGG CTCGGTACGT TCGACAATGC TGAATCAGCA 
GCAAGAGCTT ACGACGAAGC TGCACTTCGG TTTAGAGGCA ACAAAGCCAA 
ACTCAACTTC CCTGAAAACG TCAAACTCGT TAGACCTGCT TCAACCGAAG 
CACAACCTGT GCACCAAACC GCTGCTCAAA GACCGACCCA GTCAAGGAAC 
TCGGGTTCAA CGACTACCCT TTTGCCCATA AGACCTGCTT CGAATCAAAG 
CGTTCATTCG CAGCCGTTGA TGCAATCATA CAACTTGAGT TACTCTGAAA 
TGGCTCGTCA ACAACAACAG TTTCAGCAAC ATCATCAACA ATCTTTGGAT 
TTATACGATC AAATGTCGTT TCCGTTGCGT TTCGGTCACA CTGGAGGTTC 
AATGATGCAA TCTACGTCGT CATCATCATC TCATTCTCGT CCTCTGTTTT 
CCCCGGCTGC TGTTCAGCCG CCACCAGAAT CAGCTAGCGA AACCGGTTAT 
CTCCAGGATA TACAATGGCC ATCAGACAAG ACTAGTAATA ACTACAATAA 
TAGTCCATCC TCCTGATGAC TTGCTTCATT TTATTTGTTT CACTATAGAG 
TAATAGAAAA CAGGAAAATG ATTATATGTT ATAGAGTTAT TTTTCCAAAT 
ATTATAGGGT TTAGGTTGTT TGTATTGTTC TGCTTTCATC CTCTCATGCT 
TTTTTTCTTA ATTTATTATA TTTTTGCATT ATAATTTCGT TTCATTGTAA 
CAAACATTAA AAAGACCACA TGGAGAAAGG AAAAAAAAGA GAGTTTTG

Gene models with high sequence identity

AT5G64750.1 [+] show detail - Integrase-type DNA-binding superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	5.4e-11
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	5.4e-11
superfamily	DNA-binding, integrase-type	5.7e-24
Gene3D	Pathogenesis-related transcriptional factor/ERF, DNA-binding	6.4e-24
ProfileScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	25.106
HMMPfam	Pathogenesis-related transcriptional factor/ERF, DNA-binding	5.4e-17
HMMSmart	Pathogenesis-related transcriptional factor/ERF, DNA-binding	8.4e-36

See the detailed result >

AT5G64750.1

Model type: Protein coding
Short Description: Integrase-type DNA-binding superfamily protein
Curator Summary: Encodes a putative transcription factor containing an AP2 domain. Is a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. Expressed in response to ABA, osmotic stress, sugar stress and drought. Mutants are hypersensitive to these stresses. May be involved in regulation of ABA mediated stress response.
Computational Description: ABA REPRESSOR1 (ABR1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR