F08515

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08515

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08515

Determination of introduced cDNA(s)

  • RAFL09-39-B14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-39-B14 - Resource: pda06204

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-39-B14 - full reading 
    GCCTGACTCT CTTTCTCTCT CTCCCGGCGA CGACGGTTTA GAGTCGCCAT 
    AGATGGATCA TAACTCGCCG AAATCTCGTC GGAGCCGGAA ACCGGAGCCC 
    AAACCTGACA TATACTCCAC TTTCGTAGTC CACTCCGACT CTGATTCTGA 
    TCAAGGTCGA GATCGAGACA AACGTAAAGC CAAACCTGAG GAAGACGAAA 
    ATGTCGATTT ATACGCTACA ATGGTCTACA AAGGCGATAG TGACGGAGAA 
    GGAGAGGAAG ATGATGATGA CGATTCTATG CTTCCTCCTC TTCTCAAGCG 
    TCTTCCCAAG GATTTCGGAG GCGGCGCGTC GCTCGATTAC GACGACGACG 
    ACGGTGATGA ATCTGGAGAT TTCGGTACGA TGATTGTGAA AACAGATCGG 
    AGTAGTCATA GTAAGAAGAA CAGTCCGTAC TCGTCCAAAC CGCGAATGGG 
    AGTTAGTCCT AGGAGGAGAG CGAGAGGCGG AGATGAGGAA TCTTCTGATG 
    AAGAAGACGA AGAAGAAGAT GATGATGACG ACGACGGAGA CTACGGTACG 
    TTTGTTGTGA AATCTAAGGA TAAAAAGGGA AAGAAGAAAG ACAAGGAGAT 
    TGATATGACA ACTATGGGAA GAGCTGTTGC GAGTATGCAG AAATCAAATT 
    TTGGTGGTAA GACTCGGAAA TTGGATCCTT CCTCTTCTTC TTCGAAACTT 
    CACGGTGAAG ATAATCGGAA AATGCAGCAG CAAAACAGGA AAGGATCATA 
    TGGATCTGTA TACAAGGCAA GAGATTTGAA AACATCAGAG ATTGTTGCTG 
    TGAAAGTCAT ATCACTTACT GAAGGGGAGG AGGGGTATGA AGAGATCCGG 
    GGAGAAATTG AGATGCTGCA GCAATGTAAT CATCCTAATG TTGTCCGCTA 
    CCTAGGGAGT TACCAAGGAG AAGATTATCT TTGGATAGTG ATGGAGTATT 
    GTGGAGGTGG AAGTGTTGCT GATCTTATGA ATGTTACTGA GGAGGCGTTA 
    GAGGAGTATC AGATAGCATA TATATGTCGG GAGGCGTTGA AGGGCCTTGC 
    ATACTTGCAC TCAATATATA AAGTCCATAG AGACATTAAA GGTGGAAATA 
    TCTTGTTAAC TGAACAAGGA GAGGTCAAGT TGGGTGACTT TGGGGTTGCA 
    GCTCAACTTA CTCGCACTAT GTCGAAGCGA AACACGTTCA TTGGGACTCC 
    ACATTGGATG GCCCCAGAGG TTATTCAGGA AAATCGTTAT GATGGGAAGG 
    TTGATGTATG GGCTCTTGGT GTTTCAGCTA TTGAGATGGC AGAGGGGCTC 
    CCTCCAAGAT CATCAGTTCA TCCGATGAGG GTTTTGTTCA TGATATCCAT 
    CGAGCCAGCT CCAATGCTCG AGGATAAAGA AAAATGGTCC CTGGTCTTTC 
    ATGATTTTGT TGCAAAGTGC CTCACAAAGG AACCACGTCT TCGCCCAACT 
    GCAGCTGAGA TGCTTAAGCA CAAATTTGTT GAGAGATGTA AAACTGGGGC 
    TTCTGCAATG TCGCCAAAGA TTGAGAAGTC CAGACAAATC AGAGCTACAA 
    TGGCTCTGCA AGCGCAAAGT GTTGTCGCAC CTTCTTTGGA GGACACTTCA 
    ACACTGGGTC CAAAATCAAG CGAGGAGCTT GGAATTACTG TTCCATCTAA 
    ACCTCCTCAA AATTCGACCG AAGCACCTCT AACCAGCACC CTGAATCGGC 
    AGCATATTAC TGGCAACACT GTGTTGGCTG GAGAAGGTGG TGACTTCGGA 
    ACTATGATCG TTCATGGTGA GGATGAGACA GAGGAGAGTG ACTCCAGGTC 
    TCAGCTTGTC AGAGAAAAAG AATCTTCATC TTCTCAGTTT GAAGGTGTTC 
    CTCGCGAATT CCCAGGAGAA GAATTACCTG ACTCATGGAT ACATGACAAA 
    AAGAAGCCTC CGGCTATTGA TCTTCCAGTT GAAGCTTCGA TTTCACAGAG 
    CATGCAGGCA AGTTCATCTC ATGAGCATAG AACCAAGCTA CATAACATAG 
    CTGGAACACA GATGGAAGGT GGCAGTGATG CAAGTGGTAG TACCTTGAAA 
    AATGAAACTG TTGGCAGGAA AGCTTTTGCT TTGCAAGATA AGTTATGGTC 
    AATCTACGCA GCTGGAAACA CAGTACCGAT ACCGTTCTTG AGAGCAACAG 
    ATATATCCCC AATCGCACTC TTGTCAGAGA ACATGATCGG AGGCATGCAA 
    CAAGATGGGA ATGGAACTGT AGCCGTCGAA GCACTTCAGG AGCTCTTCAC 
    TTCTTCTGAT CCCCAATCCA AAAAGGGCCG ACGTGGACAA AACGAGATGC 
    CTCTTCCTCC AAGCGTATAC CAAAGACTGA CAACAAGCTC TTCTCTGATG 
    AACCTTGCAC AAGTTTTAGC CTACCACAGA GCGTGTTACG AGGAAATGCC 
    GCTGCAGGAA TTGCAAGCAA CGCAGGAGCA GCAAACCATT CAGAATCTGT 
    GCGATACTCT TCGCACTATT CTCCGCCTCT AAATAGTCTT GTGTTCATAT 
    CTGTTGCTAC TCTTGTATTA GTATAGGTCG TCTCAGCAAG TACATGTTTA 
    TTTTCCTAGA AGTTTTTATT AAAAACCAAT CAATTTTGTC TCAAAAAAAA 
    AAAAAAAA

    Gene models with high sequence identity

    1. AT1G69220.2 [+] show detail - Protein kinase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-protein kinase domain 1.50000965748778e-90
    Gene3D G3DSA:1.10.510.10 4.19999771339602e-58
    superfamily Protein kinase-like domain 8.3e-83
    HMMPanther PTHR22986 0
    HMMPanther PTHR22986:SF93 0
    HMMPfam Serine/threonine-protein kinase-like domain 7.69999999999997e-64
    ProfileScan Protein kinase, catalytic domain 0

    See the detailed result >

    AT1G69220.2

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Curator Summary
    Encodes a putative serine/threonine kinase (SIK1).
    Computational Description
    SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 135073 Blast hits to 131353 proteins in 4820 species: Archae - 174; Bacteria - 17099; Metazoa - 50056; Fungi - 12728; Plants - 33057; Viruses - 559; Other Eukaryotes - 21400 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR