F08331

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08331

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F08331

Determination of introduced cDNA(s)

  • RAFL09-10-I03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-10-I03 - Resource: pda05357

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-10-I03 - full reading 
    ACACCTAACT TGTTTAGTAC ACAACAGCAA CATCAAACTC TAATAAACCC 
    AAGTTGGTGT ATACTATAAT GGTGATGGCT GGTGCTTCTT CTTTGGATGA 
    GATCAGACAG GCTCAGAGAG CTGATGGACC TGCAGGCATC TTGGCTATTG 
    GCACTGCTAA CCCTGAGAAC CATGTGCTTC AGGCGGAGTA TCCTGACTAC 
    TACTTCCGCA TCACCAACAG TGAACACATG ACCGACCTCA AGGAGAAGTT 
    CAAGCGCATG TGCGACAAGT CGACAATTCG GAAACGTCAC ATGCATCTGA 
    CGGAGGAATT CCTCAAGGAA AACCCACACA TGTGTGCTTA CATGGCTCCT 
    TCTCTGGACA CCAGACAGGA CATCGTGGTG GTCGAAGTCC CTAAGCTAGG 
    CAAAGAAGCG GCAGTGAAGG CCATCAAGGA GTGGGGCCAG CCCAAGTCAA 
    AGATCACTCA TGTCGTCTTC TGCACTACCT CCGGCGTCGA CATGCCTGGT 
    GCTGACTACC AGCTCACCAA GCTTCTTGGT CTCCGTCCTT CCGTCAAGCG 
    TCTCATGATG TACCAGCAAG GTTGCTTCGC CGGCGGTACT GTCCTCCGTA 
    TCGCTAAGGA TCTCGCCGAG AACAATCGTG GAGCACGTGT CCTCGTTGTC 
    TGCTCTGAGA TCACAGCCGT TACCTTCCGT GGTCCCTCTG ACACCCACCT 
    TGACTCCCTC GTCGGTCAGG CTCTTTTCAG TGATGGCGCC GCCGCACTCA 
    TTGTGGGGTC GGACCCTGAC ACATCTGTCG GAGAGAAACC CATCTTTGAG 
    ATGGTGTCTG CCGCTCAGAC CATCCTTCCA GACTCTGATG GTGCCATAGA 
    CGGACATTTG AGGGAAGTTG GTCTCACCTT CCATCTCCTC AAGGATGTTC 
    CCGGCCTCAT CTCCAAGAAC ATTGTGAAGA GTCTAGACGA AGCGTTTAAA 
    CCTTTGGGGA TAAGTGACTG GAACTCCCTC TTCTGGATAG CCCACCCTGG 
    AGGTCCAGCG ATCCTAGACC AGGTGGAGAT AAAGCTAGGA CTAAAGGAAG 
    AGAAGATGAG GGCGACACGT CACGTGTTGA GCGAGTATGG AAACATGTCG 
    AGCGCGTGCG TTCTCTTCAT ACTAGACGAG ATGAGGAGGA AGTCAGCTAA 
    GGATGGTGTG GCCACGACAG GAGAAGGGTT GGAGTGGGGT GTCTTGTTTG 
    GTTTCGGACC AGGTCTCACT GTTGAGACAG TCGTCTTGCA CAGCGTTCCT 
    CTCTAAACAG AACGCTTGCC TTCTATCTGC CTACCTACCT ACGCAAAACT 
    TTAATCCTGT CTTATGTTTT ATATAATATA ATCATTATAT GTTTACGCAA 
    TAATTAAGGA AGAATTCATT TGATGTAAAA T

    Gene models with high sequence identity

    1. AT5G13930.1 [+] show detail - Chalcone and stilbene synthase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thiolase-like 1.9e-110
    Gene3D Thiolase-like, subgroup 8.2e-92
    Gene3D Thiolase-like, subgroup 2.3e-58
    HMMPfam Chalcone/stilbene synthase, N-terminal 1.8e-126
    HMMPfam Chalcone/stilbene synthase, C-terminal 1.6e-78
    PatternScan Chalcone/stilbene synthase, active site 0
    HMMPIR Polyketide synthase, type III 1.7e-194

    See the detailed result >

    AT5G13930.1

    Model type
    Protein coding
    Short Description
    Chalcone and stilbene synthase family protein
    Curator Summary
    Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.
    Computational Description
    TRANSPARENT TESTA 4 (TT4); FUNCTIONS IN: naringenin-chalcone synthase activity; INVOLVED IN: in 11 processes; LOCATED IN: plant-type vacuole membrane, endoplasmic reticulum, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Chalcone/stilbene synthase, active site (InterPro:IPR018088), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT4G34850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR