F07932

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07932

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07932

Determination of introduced cDNA(s)

  • RAFL07-15-B14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-15-B14 - Resource: pda17333

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-15-B14 - full reading 
    GACCCGTACT GGAACAAGAT GTTATCTAAA AAACTTCTTC ACCTTCAGCT 
    TTAGCTTCGT TGTTGCTTAC TGAAACTTTT CTCTCTTTAC ATCAAATTTA 
    TGGGGTGTTG TTTTTCTGTC CAGTTTTCTT TTGATGATCA AACCCTGGTA 
    CGTATCTTTA ATTTCTTATG TGGGAACATC AACAGAAACT CTTTTGGAGT 
    GGAGGAGAGG CCTACTCAGC CTACTATTGG TCAAGAAGAA ATGCTCGAAA 
    AGGCATGGAA TCGCCTTATG GAAGATAGAG TCGGAATCAT GGGTCTTCAC 
    GGTATGGGTG GTGTTGGAAA AACCACCCTT TTCAAGAAAA TCCACAATAA 
    GTTCGCTAAA ATGTCTAGTA GGTTTGACAT TGTGATCTGG ATCGTGGTGT 
    CTAAAGGCGC AAAGCTTTCA AAGCTTCAAG AAGATATTGC AGAGAAACTA 
    CACCTTTGTG ACGACCTGTG GAAGAACAAG AATGAAAGTG ATAAGGCCAC 
    CGATATACAC AGAGTCTTAA AGGGCAAGAG ATTTGTTTTG ATGTTGGATG 
    ATATATGGGA GAAAGTGGAT TTAGAGGCCA TTGGTGTTCC CTATCCGAGT 
    GAAGTAAATA AATGCAAAGT AGCATTCACC ACCCGAGATC AAAAAGTTTG 
    TGGGGAGATG GGGGATCATA AGCCGATGCA AGTCAAATGT TTGGAACCAG 
    AGGATGCATG GGAGTTGTTC AAAAACAAGG TCGGAGACAA CACATTACGT 
    AGTGATCCCG TCATTGTGGA GTTGGCAAGA GAGGTCGCTC AAAAATGTCG 
    TGGTCTGCCA TTGGCGCTCA GTGTCATTGG TGAGACAATG GCATCTAAAA 
    CTATGGTACA AGAATGGGAG CATGCAATCG ATGTTTTGAC TAGATCCGCT 
    GCAGAGTTTT CTAATATGGG AAACAAAATT CTTCCGATTC TCAAGTACAG 
    CTACGATAGC TTGGGGGATG AACATATCAA GTCGTGTTTC CTATATTGTG 
    CTTTGTTTCC CGAAGATGAT GAGATATATA ACGAAAAGTT GATAGACTAC 
    TGGATATGCG AAGGATTCAT CTGAGAAGAC CAAGTTATAA AAAGAGCGAG 
    GAATAAGGGT TATGAGATGC TCGGTACCCT TACCCTTGCG AACTTGCTAA 
    CAAAGGTTGG TACAGAACAT GTTGTGATGC ATGACGTGGT TCGTGAAATG 
    GCTTTATGGA TTGCATCCGA TTTTGGGAAA CAGAAAGAGA ATTTTGTTGT 
    GCGAGCAAGA GTCGGGTTAC ATGAAAGACC AGAAGCCAAG GATTGGGGAG 
    CTGTGAGAAG GATGTCATTA ATGGATAATC ATATTGAAGA GATAACATGC 
    GAGTCCAAGT GTTCTGAACT TACAACTTTG TTCCTTCAAA GTAATCAATT 
    GAAGAATCTA TCAGGTGAAT TCATTCGGTA TATGCAAAAG CTAGTTGTTT 
    TAGATCTTTC ATATAATCGT GACTTCAATA AACTTCCAGA GCAGATATCG 
    GGGCTGGTCT CGTTGCAGTT TCTTGACTTG TCGAATACAA GTATAAAGCA 
    ACTGCCTGTT GGTCTTAAAA AGTTGAAAAA GCTAACTTTT CTGAATTTGG 
    CTTAAACTGT GCGACTTTGT AGTATCAGTG GGATATCAAG GTTGTTGAGT 
    TTAAGATTGT TGAGACTGCT AGGGTCTAAA GTTCATGGAG ATGCTAGCGT 
    ATTGAAGGAG CTGCAGAAAT TGCAGAATCT ACAACATCTA GCCATAACTC 
    TATCCGCGGA GTTAAGTTTG AATCAAAGGT TGGCGAACTT AATCTCTATT 
    CTTGGTATTG AGGGGTTTCT TCAAAAGCCA TTCGATTTAT CATTCCTGGC 
    GAGTATGGAG AATCTTAGTT CCCTATGGGT GAAAAATAGT TATTTCTCGG 
    AGATAAAGTG CAGAGAAAGC GAGACGGCCT CGTCTTATTT ACGCATCAAT 
    CCGAAAATTC CATGCTTTAC CAACCTCTCA CGACTGGGGT TAAGTAAGTG 
    CCATAGCATA AAGGATCTGA CTTGGATATT GTTTGCTCCA AATCTTGTCT 
    ACCTATACAT TGAAGATTCA AGAGAAGTGG GAGAAATAAT AAACAAAGAG 
    AAAGCAACCA ATCTTACAAG TATTACACCA TTTCTGAAAC TAGAAAGGTT 
    GATTTTGTAT AATTTGCCGA AGCTGGAGAG TATCTACTGG AGTCCTCTCC 
    ACTTTCCACG TTTGTTAATT ATACATGTTC TAGACTGTCC AAAGCTGAGA 
    AAGCTTCCAT TAAATGCTAC AAGTGTCCCA CTAGTTGAAG AATTTCAAAT 
    ACGTATGTAT CCTCCAGGAC TGGGAAATGA GCTTGAATGG GAGGACGAAG 
    ATACCAAAAA TCGATTCGTG CTTTCAATCA AGAAGTAGTA CTAGTACGTC 
    GTCTAAAGAT CCATTACTCA GGAATGGGAT TCCTCGCTGT CCAAAATCAG 
    AATCCACGCT TCTTCTTCTT CTATTGCTTT ATCTATCTTC TTGTAGTTAT 
    GGTGTGTTGT TCATTTGGAT TGTATAAAAC TGATTTGCAT TCTGATATCT 
    TTGAAGTGTG TTGTGCTGTT CACTTGGATT ATGTTACAAA ACTGATTTGG 
    AGTCTGATGC TTTTTTATAT GAAGTTAATT TTTAAAAAAA AAA

    Gene models with high sequence identity

    1. AT1G61300.1 [+] show detail - LRR and NB-ARC domains-containing disease resistance protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RAS SUPPRESSOR PROTEIN 1, RSU1 1.6e-10
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1.6e-10
    HMMPfam NB-ARC 9.7e-105
    HMMPfam Leucine-rich repeat 0.17
    HMMPfam Leucine-rich repeat 0.022
    FPrintScan Disease resistance protein 2.6e-20
    FPrintScan Disease resistance protein 2.6e-20
    FPrintScan Disease resistance protein 2.6e-20
    Gene3D no description 1.2e-15
    superfamily P-loop containing nucleoside triphosphate hyd 6.7e-18
    superfamily L domain-like 3.3e-22
    superfamily L domain-like 1e-10

    See the detailed result >

    AT1G61300.1

    Model type
    Protein coding
    Short Description
    LRR and NB-ARC domains-containing disease resistance protein
    Computational Description
    LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, apoptosis, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G61310.1); Has 27714 Blast hits to 22073 proteins in 822 species: Archae - 18; Bacteria - 5358; Metazoa - 4578; Fungi - 354; Plants - 16806; Viruses - 2; Other Eukaryotes - 598 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR