F06410

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06410

Determination of introduced cDNA(s)

RAFL06-84-K03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-84-K03 - Resource: pda03874

full reading [+] show sequence

ATTCCAGTGT TGGTACATAA AAGACTCTTC CTTTGTCTGT TTTTTGTTCC 
CAGATTCATC TTTACTTATT GACTAAATTC TCTCTGGTGT GAGAAGTAAA 
ATGGGTCACG GAGGAGAAGG GATGTCGCTT GAATTCACTC CGACGTGGGT 
CGTCGCCGGA GTTTGTACGG TCATCGTCGC GATTTCACTG GCGGTGGAGC 
GTTTGCTTCA CTATTTCGGT ACTGTTCTTA AGAAGAAGAA GCAAAAACCC 
CTTTACGAAG CCCTTCAAAA GGTTAAAGAA GAGCTGATGT TGTTAGGGTT 
TATATCGCTG TTACTGACGG TATTCCAAGG GCTCATTTCC AAATTCTGTG 
TGAAAGAAAA TGTGCTTATG CATATGCTTC CATGTTCTCT CGATTCAAGA 
CGAGAAGCTG GGGCAAGTGA ACATAAAAAC GTTACAGCAA AAGAACATTT 
TCAGACTTTT TTACCTATTG TTGGAACCAC TAGGCGTCTA CTTGCTGAAC 
ATGCTGCTGT GCAAGTTGGT TACTGTAGCG AAAAGGGTAA AGTACCATTG 
CTTTCGCTTG AGGCATTGCA CCATCTACAT ATTTTCATCT TCGTCCTCGC 
CATATCCCAT GTGACATTCT GTGTCCTTAC CGTGATTTTT GGAAGCACAA 
GGATTCACCA ATGGAAGAAA TGGGAGGATT CGATCGCAGA TGAGAAGTTT 
GACCCCGAAA CAGCTCTCAG GAAAAGAAGG GTCACTCATG TACACAACCA 
TGCTTTTATT AAAGAGCATT TTCTTGGTAT TGGCAAAGAT TCAGTCATCC 
TCGGATGGAC GCAATCCTTT CTCAAGCAAT TCTATGATTC TGTGACGAAA 
TCAGATTACG TGACTTTACG TCTTGGTTTC ATTATGACAC ATTGTAAGGG 
AAACCCCAAG CTTAATTTCC ACAAGTATAT GATGCGCGCT CTAGAGGATG 
ATTTCAAACA AGTTGTTGGT ATTAGTTGGT ATCTTTGGAT CTTTGTCGTC 
ATCTTTTTGC TGCTAAATGT TAACGGATGG CACACATATT TCTGGATAGC 
ATTTATTCCC TTTGCTTTGC TTCTTGCTGT GGGAACAAAG TTGGAGCATG 
TGATTGCACA GTTAGCTCAT GAAGTTGCAG AGAAACATGT AGCCATTGAA 
GGAGACTTAG TGGTGAAACC CTCAGATGAG CATTTCTGGT TCAGCAAACC 
TCAAATTGTT CTCTACTTGA TCCATTTTAT CCTCTTCCAG AATGCTTTTG 
AGATTGCGTT TTTCTTTTGG ATTTGGGTTA CATACGGCTT CGACTCGTGC 
ATTATGGGAC AGGTGAGATA CATTGTTCCA AGATTGGTTA TCGGGGTCTT 
CATTCAAGTG CTTTGCAGTT ACAGTACACT GCCTCTTTAC GCCATCGTCT 
CACAGATGGG AAGTAGCTTC AAGAAAGCTA TATTCGAGGA GAATGTGCAG 
GTTGGTCTTG TTGGTTGGGC ACAGAAAGTG AAACAAAAGA GAGACCTAAA 
AGCTGCAGCT AGTAATGGAG ACGAAGGAAG CTCTCAGGCT GGTCCTGGTC 
CTGATTCTGG TTCTGGTTCT GCTCCTGCTG CTGGTCCTGG TGCAGGTTTT 
GCAGGAATTC AGCTCAGCAG AGTAACAAGA AACAACGCAG GGGACACAAA 
CAATGAGATT ACACCTGATC ATAACAACTG AGCAGAGATA TTATCTTTTC 
CATTTAGAGG ATCATCATCA GATTTTAGCT TCAAGGTCCG GTTTTGTGGT 
TTATACATAA GTTATAGTGA CTTGATTTTT TTGTTTTGTT ACAAAGTTAC 
CATCTTTGGA TTAGAATTGG GAAATTGAAT CTGTTTGTAT ATTGTATTAT 
TTGGAACATT GTGGATGCCC ATGGATATGT TTCTGTTCAA TTATTTTGGT 
TTTGGGTAAT GAAATTTGAA ACCAACGAAA AACCAAAAAA AAAAAAAAAA

Gene models with high sequence identity

AT4G02600.1 [+] show detail - Seven transmembrane MLO family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

See the detailed result >

AT4G02600.1

Model type: Protein coding
Short Description: Seven transmembrane MLO family protein
Curator Summary: A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO1 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and in papillae, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).
Computational Description: MLO1; FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT2G44110.1); Has 552 Blast hits to 532 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 548; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR