F03840

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03840

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03840

Determination of introduced cDNA(s)

  • RAFL16-78-G02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-78-G02 - Resource: pdz88620

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL16-78-G02 - 5 prime EST 
    AACCGCCTTT TCGGTTTTCA CGGTAAGGCT CGGAGGAAAA CCTAATTCGT 
    CCGGAGAATC TCCACCTCAC TCTCGCCAAA CGCATCTCTG TTGTAGCTTG 
    TGATGGATCC AACACAGAAC ACAAGTGCAG GGATTGGTGG GAGCAATGGT 
    ACAATCAGAT ATCAAACCAA TGATGGGACT TCAACTGTGA CCGTTGCTGA 
    TGATTCAAAG GAGAATCTTT CCCAAGTCAT AAACTCTATT GAGAAAACTT 
    TAGGAGTCCT TCATCAGTTA CACCTTACCG TCACTTCTTT CACACCCGCG 
    TCTCAACTCC ATCTCCTCCA GCGCCTTAAC TCTCTTGTGA TGGAGCTAGA 
    TAACATGACT AAGTTGTCTG AGAAATGCAA CATTCAAATC CCCATGGAGG 
    TTCTTAACTT GATTGATGAT GGGAAGAACC CGGATGAGTT TACGAAAGAT 
    GTTCTTAATA GCTGCATAGC TAGAAATCAA GTTACTAAGG GCAAGACTGA 
    TGCTTTTAAG GATTTGAGAA AACATATTCT GGAGGAGCTT GAACAGAATT 
    TCCCTGATGA AGTCGATATG TATAGAGAAA ATCCGTGCTA TTTCTGCTGC 
    TGAAGCGAAA CGGTTGGCGC ATTCGCAAGT GTGTTACCAA NTGGGGATGC 
    AAAGGTCAAG AATGAGCCNT AANAGC

    Gene models with high sequence identity

    1. AT1G26665.1 [+] show detail - Mediator complex, subunit Med10
      E-value: 0; Score: 99.25

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL16-78-G02 - 3 prime EST 
    CCTTTATTAA AATTTAAAAA CCAACTTAAT AAAATTTAAA ACTATATATA 
    TATAACGACG CGATTTTTAG ACTTTCTTGG GAGCCAAACT TAGATTTGAT 
    TTTTTCGATT TCTTCCGTTC CGATTTGAAA CGTCGTCGTT AAAACGTGAT 
    CCGGAATCGC CGGAGTGGCT GTGAATAGCG TGGGGGCGAT CGATTGTGTT 
    CCCGGTAATT GACTGTTGAA CGCAGAGATC ACCGACGCCG GTTTCGCTTT 
    GTCGTTGTTT TTCTGGTAAT GAATCAATCC TCTAGGGAAG ACGAACACTT 
    CTCCTTTCTT CACCGTCTTA GCGAAGAGCT TGTTCGCCGT CGTTATGAAT 
    CCAACGTCAA GCTCGCCTTC CAAAACGAAG ATCACTTCGG TGGCGCGTGG 
    ATG

    Gene models with high sequence identity

    1. AT3G62020.1 [+] show detail - germin-like protein 10
      E-value: 0; Score: 98.76

    AT1G26665.1

    Model type
    Protein coding
    Short Description
    Mediator complex, subunit Med10
    Computational Description
    Mediator complex, subunit Med10; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med10 (InterPro:IPR019145); BEST Arabidopsis thaliana protein match is: Mediator complex, subunit Med10 (TAIR:AT5G41910.1); Has 312 Blast hits to 312 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 119; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT3G62020.1

    Model type
    Protein coding
    Short Description
    germin-like protein 10
    Curator Summary
    germin-like protein (GLP10)
    Computational Description
    germin-like protein 10 (GLP10); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein subfamily 2 member 2 precursor (TAIR:AT1G02335.1); Has 1676 Blast hits to 1670 proteins in 151 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 43; Plants - 1483; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR