F02502

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02502

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02502

Determination of introduced cDNA(s)

  • RAFL06-81-N20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-81-N20 - Resource: pda17250

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-81-N20 - full reading 
    GACCACAGAA GAATCTAGAC CCAGAGAGAG AGAGAGAGAG AGAGAGAGAG 
    ATCAGTAACG AGAGAGTCAA AGAGAGGAGA TTTCAGTGAA GATGAAGGAG 
    ATGCAGGCAA TAGAGACGTC GCAGCCGACG ACGGTGGCTC CGGCGGTGCA 
    TAGCCGACAA TTGGGAGCTC AGTTGTCGGG AAGTATGAGT TTCAGCAGCC 
    AAATGTCGAA GGAAGATGAG GAGATGTCTA GAACTGCGTT ATCTGCGTTT 
    AGAGCGAAAG AAGAAGAGAT CGAGAAGAAG AAGATGGAGA TTAGGGAAAG 
    GGTTCAAGCT CAGCTTGGTC GTGTCGAAGA AGAGACTAAG CGTCTTGCTT 
    TGATCCGTGA GGAACTTGAA GGATTAGCTG ATCCCATGAG GAAAGAAGTT 
    GCTATGGTTA GGAAGAAGAT TGATTCTGTC AACAAAGAAT TAAAGCCATT 
    GGGCCATACA GTTCAGAAAA AGGAACGAGA GTACAAAGAA GCTCTTGAAG 
    CATTCAACGA AAAGAACAGG GAGAAGGTGC AGCTAATCAC CAGGCTAATG 
    GAGTTGGTGG GAGAAAGCGA AAAGATGAGA ATGAAGAAGC TGGAAGAGCT 
    AAGCAAGAAC ATAGATTCTA TACACTGACT TTGAATCCAA GACAGTACAA 
    GAACTTCTTG GGCCAGAGAT CATTCTCTGA GTGTTTTAAC TCTACGTTTA 
    GGTTTGGTGG TGGTGAATGT AATTTATATT TTATAATCGT CGTGTGTTAT 
    ATTACTACTA CAATTATTAT CTTTGTTAGG GGTTCTTGGA GAATTTATAA 
    GTGTAATGTG GTTTTTTTAG GAAGTAACTT CAAAAAATAC TCATCAAGAC 
    AGGTTTGTAA CTAAACGCTT CTTCTTCTTT TCTCTGAACT AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G09980.1 [+] show detail - Family of unknown function (DUF662)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Protein of unknown function DUF662 1.4e-79
    HMMPanther Protein of unknown function DUF662 9.2e-47

    See the detailed result >

    AT3G09980.1

    Model type
    Protein coding
    Short Description
    Family of unknown function (DUF662)
    Computational Description
    Family of unknown function (DUF662) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT2G36410.2); Has 2513 Blast hits to 2174 proteins in 327 species: Archae - 81; Bacteria - 288; Metazoa - 1019; Fungi - 163; Plants - 196; Viruses - 10; Other Eukaryotes - 756 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR