F00848

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00848

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00848

Determination of introduced cDNA(s)

  • RAFL09-22-O14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-O14 - Resource: pda05678

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-O14 - full reading 
    ATTCACTATT TGCTTTCTAT CTTTCTGCTG CGAATCAATG GCGCTATGGA 
    TGGACGCTGG AGCGACGCCG ACCACGGAGA AGGAAAAGGC TGATCTTGAA 
    GCTATTTCTG CTCTCAAAGA ATCCACCGCC ATCGAATTCA AAGAAGAGGG 
    CAATGAATGT GTAAGGAAAG GGAAAGCATT ACTCTGAGGC GATTGATTGT 
    TACACGAAAG CCATTAGTCA GGGAGTTCTA AGTGATTCAG AGACCTCTAT 
    TTTGTTCTCG AATCGATCCC ATGTTAATCT ACTCTTAGGC AACTATCGGC 
    GTGCCCTCAC CGATGCTGAG GAATCAATGA GGTTATCTCC TCATAACGTT 
    AAGGCGGTGT ATCGAGCTGC TAAGGCATCC ATGTCATTGG ATTTGCTGAA 
    CGAGGCAAAG TCTTATTGTG AAAAGGGAAT CGAGAATGAT CCGAGTAATG 
    AGGACATGAA GAAGCTTTTA AAACTTGTGA ATTCAAAGAA GCAAGAGAAA 
    GAACAACATG AGGCTCAAGC CTCACAGGCG GTGGTGGAAG CCAAGGCTTG 
    TCTCTCTGCG ATCGAGAACA GAGGAGTGAA GATTGGCAAA GCAATGTACC 
    GAGAACTCAC TGGTTTGAAG AAGCCAATGT TAGATAAAAA CAACATCCTT 
    CATTGGCCTG TCCTGCTTCT TTACGCTGAG GCCATGACAA GTGACTTTGT 
    TGAGGACTTT TGTGAAACAG ACATGTTTGC AACTCATCTT GATATGATGT 
    TTTCAGAGGA CAGCCCGCCG CTGCCATGGG ATAAAAACAA CGAATACTCA 
    CGTGATGTTA TTGAGCTTTA CTACGAGGCG AGTTCAGGAA CTCCATTGCC 
    TAGGAGTAGA GTTCTCCAGT ATCTTTTAGA AGGTACAAAA GGTTCTCAAG 
    CTGAAACTAC CGGAGAAGAG GACACAAGCG CAACCAAAAC ACCCTCCTAC 
    CTGAAAGGTT CTTCGGGTAT GGTTAAAGTG AACGAGAGAA GAACATTGCA 
    TGACGTGTTG AAAGAACCTA AGTTTGTCAT CCCTGAGATT CCAGTCTTTT 
    ACATCGTATC AAAGAGGTCC AAATTCTACA AGGACTTTAC CGCTGGAAAA 
    TGGACTCCAC CAAACTAAAG AATTGAGTTA GAAAGAGAAT AGTTGATGAT 
    AATTTTTTGC AGCTTCTTTT TGTTGTTGGT TGTCGTAATC TATTACTGTT 
    ACCGTTCAAA GACACAAACC TGTTCTGAGT TATGGCTAGG GCTCCGCCAC 
    GTCCAAACTT TTCTAGGTAA CGAAGGTAAA AAACCAAGGG G

    Gene models with high sequence identity

    1. AT1G04130.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 0; Score: 99.77

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Tetratricopeptide-like helical 5e-23
    Coil coiled-coil 0
    ProfileScan Tetratricopeptide repeat-containing 13.404
    HMMSmart Tetratricopeptide repeat 3.3
    HMMSmart Tetratricopeptide repeat 0.91
    HMMPanther CYCLOPHILIN SEVEN SUPPRESSOR 1 1.2e-190
    HMMPanther TPR REPEAT CONTAINING PROTEIN 1.2e-190
    superfamily TPR-like 5.3e-19

    See the detailed result >

    AT1G04130.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G56440.1); Has 5277 Blast hits to 4657 proteins in 398 species: Archae - 14; Bacteria - 308; Metazoa - 2191; Fungi - 837; Plants - 950; Viruses - 0; Other Eukaryotes - 977 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR