F00817

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00817

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00817

Determination of introduced cDNA(s)

  • RAFL06-13-O15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-13-O15 - Resource: pda09409

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-13-O15 - full reading 
    AACCAACAAG TTCTCCTTTC TACCCATTTC GTCTCCTTCA TTTTGACGTT 
    TTCTTTAGAT CTGTTAATAA TCCCATCCAT GGCTTGGTCT AGTCACTAGT 
    GGTGTTATCT CTCTGTGTGG AATAAAAAGC AAGGTTTTTT AATCACTTGG 
    ATTGTTTTAA GATATGGCAA CTTTGAACCC TTTTGATTTG TTGGATGATG 
    ATGCTGAGGA TCCAAGCCAG CTCGCTGTTG CCATCGAGAA GATTGATAAG 
    TCCAAGAAAT CTGGACAGGT TTCGAGCTTG CCTGCTAAGT CAGCTCCTAA 
    GCTTCCATCG AAGCCACTTC CTCCTGCTCA AGCCGTGAGA GAGGCAAGGA 
    GTGATGCTCC ACGTGGTGGT GGAGGCCGTG GAGGATTTAA CCGTGGTCGT 
    GGTGGTTACA ACCGTGATGA TGGTAACAAT GGATATTCAG GGGGATACAC 
    TAAACCCTCA GGTGAAGGAG ATGTTTCAAA GTCTTCTTAC GAGAGGCGTG 
    GCGGTGGTGG TGCTCCTCGT GGTTCCTTCC GTGGTGAAGG TGGTGGACCT 
    GGTGGTGGTC GTCGTGGTGG ATTCAGCAAT GAGGGTGGTG ATGGGGAACG 
    TCCTCGAAGG GCCTTTGAGC GTCGTAGTGG AACTGGCAGA GGGAGTGACT 
    TCAAGCGTGA CGGATCTGGT CGTGGGAATT GGGGAACTCC AGGGGAAGAG 
    ATAGCTGCTG AGACTGAAGC AGTAGCTGGT GTTGAGACTG AGAAGGATGT 
    TGGAGAGAAG CCAGCTGTTG ATGATGTAGC TGCTGATGCT AACAAGGAGG 
    ATACTGTTGT TGAGGAGAAA GAGCCTGAGG ATAAGGAAAT GACTCTTGAT 
    GAGTATGAGA AAATACTCGA GGAGAAGAAA AAGGCACTTC AATCATTAAC 
    TACCTCTGAG AGGAAAGTTG ATACGAAAGT GTTTGAATCA ATGCAACAAC 
    TGTCAAACAA GAAGTCTAAT GATGAAATCT TCATCAAGCT GGGTTCTGAT 
    AAGGACAAAC GCAAAGATGA CAAAGAAGAG AAGGCTAAGA AGGCTGTGAG 
    CATCAATGAG TTTCTGAAGC CAGCAGAGGG TGGGAACTAC TACCGAGGAG 
    GTCGTGGTGG CCGTGGACGT GGTGGTCGTG GCCGTGGAGG TGTTTCTAGT 
    GGCGAATCTG GTGGTTACCG TAATGAAGCT GCACCGGCAA TTGGAGATGC 
    TGCTCAGTTC CCATCTCTTG GGGGCAAGTA AGATCCATCC ATGATAACGT 
    CCACACTCGT GCATCCTCCT TTAGGATTTT GTGCGAGGAT TTACTGTTTA 
    CTGGTCTCTC GTTGTCAGAT GTAAATAATT AGGTGTCGTC GTCAGTTTTT 
    AGATTTTATG CAAAACTTTA CACTTGTTGG TGTTCTTTAC TTTTGAAACA 
    GTACACTCTT CTTAATTTTA CCATTTTACT C

    Gene models with high sequence identity

    1. AT4G16830.1 [+] show detail - Hyaluronan / mRNA binding family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NUCLEAR RNA BINDING PROTEIN A-LIKE PROTEIN 8.5e-249
    HMMPanther HYALURONIC ACID-BINDING PROTEIN 4 8.5e-249
    Coil coiled-coil 0
    HMMPfam Hyaluronan/mRNA binding protein 7.1e-28
    HMMPfam Stm1, N-terminal 9.3e-10

    See the detailed result >

    AT4G16830.1

    Model type
    Protein coding
    Short Description
    Hyaluronan / mRNA binding family
    Computational Description
    Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 23191 Blast hits to 11934 proteins in 1060 species: Archae - 16; Bacteria - 7670; Metazoa - 7282; Fungi - 1721; Plants - 3144; Viruses - 315; Other Eukaryotes - 3043 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR