ET8589

CSHL Arabidopsis genetrap mutant lines

Original: ET8589

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET8589

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 5; Position: 26345727 [Map]; Strand: w
- AT5G65840.1 - [+] show detail - Thioredoxin superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT5G65850.1 - [+] show detail - F-box and associated interaction domains-containing protein
  Distance: -587; Region: promoter

GTTTTCATCC CTATTTACTG TTTTAGGCCA ACGCCTGCAA TTACAGTGCT 
CTCTGGGATC AGAAAGATGT ATGTTAGGAT GCTTATGAAG AACGAATTCT 
TTTCATTATT TTGGGATATT ATTGTTTGAA TAGTGTTTTT TTTTGGACAC 
AGGGAATTGC TGCCGTTGTA CTCTTGAGGC ATTTCGGATG CGTTTGCTGG 
TAAATTGATT CATTCATAAA CACTTGGAAT TGTTGCAAAA TCAAGGATTG 
TTGTAAAACG TTTTTGATAA TGAATTATTT TTTTTATATG AAAGTTGGGA 
ACTTGCTACT GCTTTGAAAG AGGCTAAACC GAGATTTGAT GCGGCTGGTG 
TTAAATTGAT AGCTGTTGGA GTTGGAACTC CTGACAAGGC TCGTATACTT 
GCAACTCGGG TTTAAGATTT CTCCATTTTC TTCGATTATA TACCAACTTA 
CTGAGCTCAT GGATATGTTT TCTTTGGATG TACGTTATGT TTGCTTGTTC 
ATTGGGTTGA ACTTTTTA

3 prime edge [+] show sequence

Chromosome: 5; Position: 26345748 [Map]; Strand: w
- AT5G65840.1 - [+] show detail - Thioredoxin superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT5G65850.1 - [+] show detail - F-box and associated interaction domains-containing protein
  Distance: -566; Region: promoter

TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATTTACT GCTTCAGGCC 
AACGCCTGCA ATTCAGTGAT CTCTGGGATC AGAAAGATGT ATGTTAGGAT 
GCTTATGAAG AACGAATTCT TTTCATTATT TTGGGATATT ATTGTTTGAA 
TAGTGTTTTT TTTTGGACAC AGGGAATTGC TGCCGTTGTA CTCTTGAGGC 
ATTTCGGATG CGTTTGCTGG TAAATTGATT CATTCATAAA CACTTGGAAT 
TGTTGCAAAA TCAAGGATTG TTGTAAAACG TTTTTGATAA TGAATTATTT 
TTTTTATATG AAAGTTGGGA ACTTGCTACT GCTTTGAAAG AGGCTAAACC 
GAGATTTGAT GCGGCTGGTG TTAAATTGAT AGCTGTTGGA GTTGGAACTC 
CTGACAAGGC TCGTATACTT GCAACTCGGG TATAAGATTT CTCCATTTTC 
TTCGATATAT ATACCAACTT ACTGAGCTCA TGGATATGTT TTCTTTGGAT 
GTACGTTATG TTTGCTTGTT CATTGGGTTG AACTTTTTAA GAGAAGAACT 
TGCTTTTGAT TGTTATGCTA TGCTCTA

5 prime edge [+] show sequence

Chromosome: 5; Position: 26345848 [Map]; Strand: w
- AT5G65840.1 - [+] show detail - Thioredoxin superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT5G65850.1 - [+] show detail - F-box and associated interaction domains-containing protein
  Distance: -466; Region: promoter

TCGCCGAGAA TCTCACCGAT ATCTTCTCTG TAATCAGTGA AGGACTCAGT 
GGCAGCTCTC GCGGCAACCA CACGAGGCCT ACTAATCGGT GAAACGGAGG 
AACTGTAACT GGATTTTAAT TTGGTGACAG GAACAGCAGC AATCGACGAT 
GAGAAATTCG ATGGTAACTG AGACAACATG GGTTTCGAGC ACAGAGGAGA 
AATTGTGGAA CAAATAAGTG GCAATGAGCT CGAAGATCGT AGAGAGAGAA 
TCGCCATTGG TGATTCAGAA ACCAAAATCA TAAACTCAAT TTGGCTTATG 
GAGAAGACGA GAAGAATAAG AACAAGAGCA TCTAGAAATT AAACACGTGG 
CGAATAATGG ACCGAGAATG TATCCGGCGT CGTTTTTAGT TAAAAGCCCA 
TATTTATTTT GAAAGCCCAA TTCAAATCCA AGTCCATTAA AACAAAATTA 
CGAAAATTGC TTTCGATTTT CTCATCCAAA TTGGTTCGTC TTCCCCATAA 
A

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 26345924 [Map]; Strand: w
  - AT5G65840.1 - [+] show detail - Thioredoxin superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G65850.1 - [+] show detail - F-box and associated interaction domains-containing protein
    Distance: -390; Region: promoter
Flanking Genome Sequence: ET8589 - 5-prime edge
```
GGCTACTAAT CGGTGAAACG GAGGAACTGG AACTGGATTT TAATTTG
```

AT5G65840.1

Model type: Protein coding
Short Description: Thioredoxin superfamily protein
Computational Description: Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G37240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G65850.1

Model type: Protein coding
Short Description: F-box and associated interaction domains-containing protein
Computational Description: F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR