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ET14290

CSHL Arabidopsis genetrap mutant lines

Original: ET14290

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14290

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7381469 [Map]; Strand: c
      • AT5G22300.1 - [+] show detail - nitrilase 4
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: ET14290 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCTACCG TTTTCATCCC TACATTTCAC 
    CTTTGGGAAT TGTTTTAGCT GGACCAAACT ATAGAGGAGA AGCTCTTATC 
    ACAGCTGATC TAGGTATATT ATTAATTAAC ATTTGTTAAT CATCATCATT 
    CATTCTTGAA CAAAAAGTTA ACTAATCATA TCCTATAAAT CTCTAACAGA 
    TCTTGGGGAC TAGNCACGAG CCAAGTTTGA TTTTGATGTG GTCGGACATT 
    ACTCGAGGCC TGAAGTGTTT AGCTTGAACA TAAGGGAGCA TCCGAGAAAA 
    GCGGTCAGCT TCAAGACGTC AAAGGTAATG GAAGATGAAT CCGTCTAACA 
    AATGATCATT TGTTAGACCC AAACTTTCTC TGTAATTTGA TGAAGTTTAT 
    CTGTAGTAAA CTTCAAGACT TGTGTTGTAA TTGAAATCGA TAAAAAAATC 
    TAAACCGTTA GATTGAGTGT TGTCTTCTAT TCCTCGTTTA TACTATGCTT 
    GGTTCTGCTC GTTCCATGTT CTTCAAATTT GTACATGAAA CTAGTGATTC 
    AATAACTTGT TAGGGATTAA GATGAGTCAT TTTTACGAAA AAGATGAAAG 
    AAAAACAAAC CCAAATGGCC AAAACAAATA AGCTACCAAT TCTCTCTACT 
    CTTCCGCAAC ACAACACTCT CTATGGGTTT GGGCCTTGTT TCCTTATTTA 
    TTTCCCTGTC TCTTGGAATG GGCTTAGGCT TTTCTGTTTG TATCCACCCT 
    GTGAAAACCT AAAAATTCAT ATAAATGTTT TTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20963724 [Map]; Strand: w
      • AT1G56050.1 - [+] show detail - GTP-binding protein-related
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET14290 - 5-prime edge 
    CGTATATTAA AAATAAGTGA TTGTGAAAAC AAAGGACCAA TCAACACATT 
    CTCTGTAATT TGCGATAAAA AGATAATAGA CAAAAGAGAC GACGAACACA 
    CTTAGAAATT TTGAGCTGAG AGGCTGAGAA AATTAGCACC ATGGCGAGAG 
    CAGCTTGTAG CAGTGTCGTC ACGGCTATGG CTTTGTTACC CTCTAAGTCT 
    CTTCTCTGTA GAAACCAGTT ATTATTCTCC GGTAATTCCA AGTGCGTCGG 
    AGTTTTGACT CTCCAGAAGC GATGCTTTTC CTCCAAAGTA AGCATGAGTT 
    TGAAAGCTGG TATCGTCGGT CTTCCTAACG TCGGAAAGTC TACTCTTTTT 
    AACGCCGTCG TAAGTCCCAT TGATGCACTT GTCGTTCTTC TTTACTCTTC 
    T

AT1G56050.1

Model type
Protein coding
Short Description
GTP-binding protein-related
Computational Description
GTP-binding protein-related; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF933 (InterPro:IPR013029), TGS-like (InterPro:IPR012676), GTP1/OBG (InterPro:IPR006073), Conserved hypothetical protein CHP00092 (InterPro:IPR004396), GTP-binding protein, HSR1-related (InterPro:IPR002917), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT1G30580.1); Has 18400 Blast hits to 18396 proteins in 3002 species: Archae - 377; Bacteria - 10244; Metazoa - 785; Fungi - 603; Plants - 304; Viruses - 0; Other Eukaryotes - 6087 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G22300.1

Model type
Protein coding
Short Description
nitrilase 4
Curator Summary
encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway.
Computational Description
nitrilase 4 (NIT4); CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), Nitrilase/cyanide hydratase, conserved site (InterPro:IPR000132); BEST Arabidopsis thaliana protein match is: nitrilase 3 (TAIR:AT3G44320.1); Has 7653 Blast hits to 7575 proteins in 1747 species: Archae - 162; Bacteria - 5078; Metazoa - 407; Fungi - 539; Plants - 330; Viruses - 11; Other Eukaryotes - 1126 (source: NCBI BLink).
Link
InterPro Scan - TAIR