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ET14066

CSHL Arabidopsis genetrap mutant lines

Original: ET14066

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14066

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21036545 [Map]; Strand: c
      • AT5G51780.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: ET14066 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATTC 
    ACATCTATCT GTATGTATAT TATGTTTATT CCATCTGATT GTCATTAGCT 
    CATTTAGTTG TTTATAGATC GGAAAATTAT GTTTCCCATA AGCTGAGTTA 
    GTACTTCATG GTTATATGTT TTTTTTAATA TTTTATGGTT ATATGCTATG 
    ATTGGGATTT TATTTGATCA ATTTCAAAAA GAAATTAAAG TTTTTAGTGG 
    TGTCTAGGCA GTGTTTGAAG CTGGTAGCAT TCGTTTATTA AAAAAAAAAA 
    AAGTGGGGAG AATTCTGCTG ATTTTTTTTT AAAAAAACCC ACCGAAAATT 
    TCCAAAATAA GATTTTTTAT TTGTAAGACA AGCCTTTAAT ATTTTAAACT 
    CTTTAAGTTG CCCATATTAG GGCCCGAAAA AAAATCTGTT TCCAACCAAA 
    AAAATGAAGC TTTTTTGAAA CGCCTTTTAA AGTTTTTCCA AAATTAGCCA 
    ACCAACCTTT TTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 57279 [Map]; Strand: w
      • AT5G01170.1 - [+] show detail - Protein of unknown function (DUF740)
        Distance: -883; Region: promoter
    Flanking Genome Sequence: ET14066 - 5-prime edge 
    AAATACGCCT AACACGTACG AAAATGTATG TATGCACACG CTTCAACAAA 
    GATTTCATGC TTTGTTTGGT AATAGTATAC GAAAATATAT ATATATACAA 
    AGTAAAGATA GTGTTCAAGA TTTTTTTAAT TTTGGGTAAA TAATAAGATT 
    GATTGGAAAT GTTATAAGAA AAAGGAAAAC AGGAGAGAAT AGTGAATAGA 
    GAGACCAAAC AACAAATAAG ATTTGATGGC GTGAATTGCT TTTTCTGCTT 
    TTCTACTTTT GCTTGGCTCT TAGTTTTTAA ATTTAAATAC GACTTTAGGG 
    TAATGGACAA AGCCTGAAAA TTCACTTTTT GCTTCATAAA ACAAAATTTG 
    TCAAGGGTAT TTTATTTCTT TCAGCTGAAA TTAAGACGTA AATGGTGGTT 
    TGCTTGTTTT TGTTGCAAAA CGAATAGTAT ATCGTAGCGA CAACCCCATG 
    CAAATTGCAA AGTGATGCGA GTATTGACAA CAAAAAGAAG AGAAGCTTAG 
    CCAGTACAAA TAAAGTTGTT CAGAAGAAAA ACAAATTCGT ATAAGCACAC 
    GTGTAGCTGG ATATTCTCAG CATTTACATT AATCAATCAA TATATACACT 
    TCAATCTAAT GTTTATATTA AGAAATTGAT TGAGATTTGA TAGTTTTTGT 
    ATGTTTTGAT GG

AT5G01170.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF740)
Computational Description
Protein of unknown function (DUF740); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF740) (TAIR:AT3G09070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51780.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G25400.1); Has 292 Blast hits to 292 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 290; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR