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ET13735

CSHL Arabidopsis genetrap mutant lines

Original: ET13735

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13735

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24383436 [Map]; Strand: w
      • AT1G65580.1 - [+] show detail - Endonuclease/exonuclease/phosphatase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G65585.1 - [+] show detail - pseudogene, similar to oj991113_30.20, blastp match of 25% identity and 8.9e-...
        Distance: -907; Region: promoter
    Flanking Genome Sequence: ET13735 - 3-prime edge 
    CTGGGAGTTT AGTGAATTGT ATGGAAGTGG GAGGGGATTA GAGGTAGAGG 
    ATACGGCGCC GTATAAGGAG AGTTTAGGGA ATGAGTTTGG GTCTGCTGCT 
    GTTGTTTGTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24383559 [Map]; Strand: w
      • AT1G65580.1 - [+] show detail - Endonuclease/exonuclease/phosphatase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G65585.1 - [+] show detail - pseudogene, similar to oj991113_30.20, blastp match of 25% identity and 8.9e-...
        Distance: -784; Region: promoter
    Flanking Genome Sequence: ET13735 - 5-prime edge 
    CCTACTTTCT CCCTGATCCT CACCACCAGT CCATAACTGT CTCTCAGTAC 
    TAGTCATTGT CCTCAAAAAC CTCCCAATTT GAGTTTCTCT CAATGGATGA 
    GGTCTCACAT CAAGACTAGG TGGTCGATTC GGATGAACCG CTGACCTAAT 
    CGGAACTTTG AAGATCCCAG ATTCACCACA CTTACCAACA AATTCCGGTA 
    ACGAATCGGA GCCGTTTCCA TCACCGATCC CGTCGTGATT ACCGTCTTCG 
    CTTAGTCTCC GGTCGAGAAA TTGGATCATG TAATCGATAC GTTTGTTGCT 
    GTCGTCGACG GAAGGCTGAG ATTCATCGTC GCCGGAGGAA GATGAAGAGG 
    AGTAAGCTGA ACGGTTGAAA AGCGTGGACG GAGTTGCGGC GGAGAAGGAA 
    GGAGAGAAGA AGGAGAAAAC GTCATCGTTT TGATCGTTTT GACGATCTTC 
    CATGAGTATT GGACTTGAAG CTTTTACCTT GGAGCAGAGA GAGACGACGA 
    GTTTTTCGGT ACAAAG

AT1G65580.1

Model type
Protein coding
Short Description
Endonuclease/exonuclease/phosphatase family protein
Computational Description
FRAGILE FIBER3 (FRA3); FUNCTIONS IN: inositol or phosphatidylinositol phosphatase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G43900.1); Has 2602 Blast hits to 2499 proteins in 289 species: Archae - 0; Bacteria - 180; Metazoa - 887; Fungi - 607; Plants - 609; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G65585.1

Model type
Pseudogene
Computational Description
pseudogene, similar to oj991113_30.20, blastp match of 25% identity and 8.9e-08 P-value to GP|21741715|emb|CAD41338.1||AL662946 oj991113_30.20 {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR