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ET13201

CSHL Arabidopsis genetrap mutant lines

Original: ET13201

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13201

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20978861 [Map]; Strand: c
      • AT1G56090.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET13201 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGA 
    ATGTGCTTCT TAATAGCTAA GCATTGGGAT TCAAACAAAG ACTCAAATTT 
    TCACTAAATC TGTAAGTAAA TTGGAATCGT CTATGTATTC AATTGACCAT 
    TTCTAACATG GAAGAAGTCA AAAGAGAATT TTTTAAAAAA CCTTAATGAA 
    ATCGTGCAAT TTCAAGTAAC AAGCGGCGCG GTTGCTGTGA AGAGCGATCT 
    TCTGTGGTTT AGCTTTAGCA GCAGTAAGAG CCTCCGTATA GAAGAGAAGC 
    GCCTCCTTAT ACTTGCCGTC TCTATATAGC TGATGTCCTT TCTCCACCTT 
    GCCTGACGCC GTCACCGCTG ACGCCATAAA TGCTCCCGGA GAAGAAGAAA 
    CCGTGGATTT AAGTAATCTG CTAAAGCGAA ATAACTGTAG AAAGAAGAGA 
    GGGAGAAGGA GAGATCCAGA GAATAAGAAG AAGAAGAAGA GGGAACAATA 
    ATGGCGAGTG AAAGCGTAAA TTAAGACCTG GATTGGATTA TAATTATATG 
    AATCTTCTTC TTCGATTCTA TATGATTTTA CGATAATTAA TTTAGGCATT 
    TTACGCCGTG TATTTGTTTT CGTAATTCTT TAATTTTATT TTTAAAGAAT 
    ACTAAATTCC TAATCCCGCC ATCTGGCAGT ATTGTTGGGG TTGGAGGGTG 
    AAATATGGCC CATTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20978769 [Map]; Strand: c
      • AT1G56090.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET13201 - 5-prime edge 
    GTTGAATGGA ATCGAGAACT GTTCTAATCG GAGTCATGAG TGTTAGAAGA 
    AAGCCAACTA CTTGTGAAAT TGGTATCTAT TCAAGAATAT TAAGATCTTT 
    TGTTTTGGAT TCTTTCAGGC AGCAGAAGAA TGCACTTGTG TTCTTGAGCT 
    TGATCAGAAA CATAGCGGAG CGTTGATGCT GAGGGCTCAG ACTTTAGTCA 
    CTCTCAAAGA ATACCAATCT GCTCTTTTTG ATGTCACCGG GCTTATGGAG 
    TTGAACCCCT GATTCTGAGG TTTATCAGAA CCT

AT1G56090.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G30480.2); Has 5535 Blast hits to 5000 proteins in 436 species: Archae - 33; Bacteria - 410; Metazoa - 2580; Fungi - 616; Plants - 880; Viruses - 6; Other Eukaryotes - 1010 (source: NCBI BLink).
Link
InterPro Scan - TAIR