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ET13017

CSHL Arabidopsis genetrap mutant lines

Original: ET13017

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13017

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 16844484 [Map]; Strand: c
      • AT1G44350.1 - [+] show detail - IAA-leucine resistant (ILR)-like gene 6
        Distance: -6198; Region: intergenic
      • AT1G44382.1 - [+] show detail - pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp...
        Distance: -2251; Region: intergenic
    Flanking Genome Sequence: ET13017 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTA 
    CTGGACGCCA TTTGATGGTT CAGGGGTATT TTCGTCTGAA TTTGGCTGAA 
    TGGTTAAATG GTGGAAGACC CATTTTACTT TGCCAAATCC TGAAATAAAA 
    ACATGGTCAA TGGCTACTGT ATATAATTTA CCCAAGAAAT CAAGCGTTTT 
    AGTCGAAACC AAACATGGAA CACATAGGCC TAGAGCACCC TTTACACGTC 
    CAAAGCAACG TTTTTTTTTG GTTTTTGTTC AAAGTCCGAA GCAACCTAAA 
    CCCTGTAAAA CTTTGACAAT AGACTTGAAA ACTCTAAACA CTTTTTGAAT 
    CGATAAAAAA GAAACATACA AAGACCAAAA ACACTTCACG TCAATTTCAA 
    GGCCATCAAA ATTAAGAGTT AAAGCAAGTG TGACCAAAAA TTGTCACCCT 
    CAAAATTATG GATTGCAGTT AGATAGATAA ACCCTACCAT TCCCATTTCA 
    TCATTTGCTC GGATCATGCC CCCACAAAGA GCTATTGCAT TTCCCATGTG 
    TGATCCCGAC CTATCTAGAA AGCCTCTGTT CAATATCGCA ATCATTG

AT1G44350.1

Model type
Protein coding
Short Description
IAA-leucine resistant (ILR)-like gene 6
Curator Summary
encodes a protein similar to IAA amino acid conjugate hydrolase.
Computational Description
IAA-leucine resistant (ILR)-like gene 6 (ILL6); FUNCTIONS IN: metallopeptidase activity, IAA-amino acid conjugate hydrolase activity; INVOLVED IN: proteolysis, regulation of systemic acquired resistance, auxin metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Peptidase M20D, amidohydrolase (InterPro:IPR010168), Peptidase M20D, mername-AA028/carboxypeptidase Ss1 (InterPro:IPR017439), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: peptidase M20/M25/M40 family protein (TAIR:AT1G51760.1); Has 12322 Blast hits to 12314 proteins in 1908 species: Archae - 129; Bacteria - 9070; Metazoa - 89; Fungi - 234; Plants - 310; Viruses - 0; Other Eukaryotes - 2490 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G44382.1

Model type
Pseudogene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 48% identity and 5.3e-35 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR