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54-4268-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1719269 [Map]; Strand: w
      • AT3G05780.1 - [+] show detail - lon protease 3
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-4268-1 - 5-prime edge 
    ATCGACACCG TCACTGCGAT CGGAGAAAGA AACACGACGA CCCAATAAAT 
    CGCGAGAACT CCGGTTCCAT CCGGTAAGCT GAGTCGGTGC CCTGAAGAGT 
    AGTAGACTCT GAACCGGATT GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1719153 [Map]; Strand: w
      • AT3G05780.1 - [+] show detail - lon protease 3
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-4268-1 - 3-prime edge 
    GTGTCGATCT CTTATCTTCT TCACCGATTC TCTCAACTAA CCCTAACCTC 
    GACGATTCTC TAACGGTTTG TTCAAATTTC ACTCAAAGTT CACTTTTTTC 
    AATTGACAAA AGTTTCAATA TGATTAGCAA GTTAAAAAGT TTTTCTTCAG 
    AGTTATGTAT ATGCTTTTGA ATTTTCGATG AATCCTTTAC CTTGTTTAAT 
    TGTAGGTTAT AGCATTGCCG TTGCCTCACA AACCTCTTAT TCCTGGCTTT 
    TACATGCCAA TCCATGTCAA GGTATGTTAG TGAAACTTAG TGAAAAAATG 
    GATTTTGTTA TCTTGTGTTC TCTGACCTGT ATGTGTAAGC TN

AT3G05780.1

Model type
Protein coding
Short Description
lon protease 3
Curator Summary
Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.
Computational Description
lon protease 3 (LON3); FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: lon protease 4 (TAIR:AT3G05790.1); Has 14658 Blast hits to 14489 proteins in 2407 species: Archae - 438; Bacteria - 7797; Metazoa - 399; Fungi - 597; Plants - 312; Viruses - 7; Other Eukaryotes - 5108 (source: NCBI BLink).
Link
InterPro Scan - TAIR