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54-4257-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5332279 [Map]; Strand: c
      • AT1G15520.1 - [+] show detail - pleiotropic drug resistance 12
        Distance: 0; Region: intron21 (CDS)
    Flanking Genome Sequence: 54-4257-2 - 5-prime edge 
    GTCCCGTAAG TACCAACCTT ATTATTGTTT AATTTCAAAA TGAGCCAAAA 
    CTTATTGAAA TATTAAATAT TGACCCTAAA CGTTTATACG AAAACAGAGT 
    ATGCCTGTGT GGTGGGAATG GTACTACTGG CTTTGCCCAG TTGCATGGAC 
    ATTGTATGGA TTAATCGCAT CACAGTTCGG TGATATTACA GAACCTATGG 
    CAGATAGTAA TATGAGTGTG AAGCAATTCA TTAGAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5332395 [Map]; Strand: c
      • AT1G15520.1 - [+] show detail - pleiotropic drug resistance 12
        Distance: 0; Region: exon21 (CDS)
    Flanking Genome Sequence: 54-4257-2 - 3-prime edge 
    TACGGGACGA GGGATGAGGA AGCCGGAGAA GAGATTCCAG ATGCCGTAGA 
    AAGCGGAGGA GACGACGGAG GCGATGTGGT GGTTAGGCGT CATAGCTACA 
    GCCATCATTC CGTAGAAGGT GAAAGTTAAG AATGATCCGT ACATAAAGAA 
    GAGGTACCAG AAGAACTTCA CCGCCGTCCA CTCGAATCCT ATCATAGCGT 
    ACACTATGAG ACCGTACACT ATCGCTTGCA CGAGAACGTA TGGGATCTCG 
    ATGAAAACCT GGAACAAATC GAAGTTTGAA TTTGAGGTTT CCGCAACGAA 
    AAATCGTAAA TTTCACTCTC TATGATGTTT TTTTGAAGTA CCTGAGCGAA 
    AGCATAAGGC ATGGCGGAGT ACATTCCGGC GGCTTGTTCT CGGTAAAAGA 
    CAGTTCTTTC GACGTTGACG ACTGGTTGCA CTGAAGCTGC GTTTTGTAAT 
    CCGAGGAAGA GAACAGCTGT GTACATTGAA CCCATTGCAT TCGATAAATC 
    CTGTCTCGTT TTCCTGGAGG TGACAAAAAT ATTCGAACTT GGTCAATAAG 
    GAGTTTTGTT TTTGTATTGT AAAGTCTAGA ATTTTGCTGA NGGTTTTTTT 
    AGCTTACGTT TTGCCTCCAA GGTCCCAGAA CATTGTGCCG AACATAAGAG 
    CAATGCCGAT TGTGAAGAGG AATCTCACGG CTGTGTAAGG AGGATTTCTC 
    CAGTAN

AT1G15520.1

Model type
Protein coding
Short Description
pleiotropic drug resistance 12
Curator Summary
ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots.
Computational Description
pleiotropic drug resistance 12 (PDR12); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1); Has 377983 Blast hits to 279992 proteins in 3946 species: Archae - 7615; Bacteria - 304057; Metazoa - 8776; Fungi - 6428; Plants - 5794; Viruses - 2; Other Eukaryotes - 45311 (source: NCBI BLink).
Link
InterPro Scan - TAIR