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54-4119-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4694093 [Map]; Strand: w
      • AT5G14550.1 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: -38; Region: promoter
      • AT5G14550.2 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: -361; Region: promoter
      • AT5G14565.1 - [+] show detail - MIR398C; miRNA
        Distance: -533; Region: promoter
    Flanking Genome Sequence: 54-4119-1 - 5-prime edge 
    ATCACGTGGA AGAAGATGAG CTTTCAGCTT TCACAGAGGA GACTTGGAGA 
    GTGAGAAAGA AATAGAGGTG CTGGTGAGTG TGTAAAATCA ATGAGTAGAG 
    CTGGTGAAGT GGGCCTCTCT CTCTGATTTT TTCTTAAAGC GAACACTTCC 
    CACTGGGATA TTTTAAGCCC GGTCCAATTC TTACCCAGCA AATTATTATT 
    TTATTCTTTT CGTTAACTAT TTTTTTAACA GAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4693967 [Map]; Strand: w
      • AT5G14550.1 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G14550.2 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: -235; Region: promoter
      • AT5G14560.1 - [+] show detail - unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bac...
        Distance: 0; Region: exon1 (CDS)
      • AT5G14565.1 - [+] show detail - MIR398C; miRNA
        Distance: -659; Region: promoter
    Flanking Genome Sequence: 54-4119-1 - 3-prime edge 
    GTCTTCCCGA TCACCAAACC TTTCCGGTAA TTACTCTCCC TTGCGTTCGA 
    CGCCATCTTC CTTGGAGTTC TCTTCAATCA ACCGGTAAAT CTTCCACTGA 
    TTTTGAAGAA GATTCTTCCA TGTTCGATCT GGTTCGTCTC CAGAGATCGA 
    GAGTTGAATT GCCTCGAAAC AGCTCTAGTT TCACCAGAGA CGCGCGACCG 
    ATAGAAATAA AGAGACTCGA AGCTGCGTGT ACCGGAGACG AATGGCGGGA 
    AAATTGACTT GAGCGCGATT TTCTGTGTGG ATC

AT5G14550.1

Model type
Protein coding
Short Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Computational Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G11940.1); Has 574 Blast hits to 572 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 548; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14550.2

Model type
Protein coding
Short Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Computational Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G11940.1); Has 576 Blast hits to 576 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 546; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14560.1

Model type
Protein coding
Computational Description
unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14565.1

Model type
miRNA
Short Description
MIR398C; miRNA
Curator Summary
Encodes a microRNA that targets both CSD and CytC oxidase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGUGUUCUCAGGUCACCCCUG. Down-regulated by biotic and abiotic stress.
Link
InterPro Scan - TAIR