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54-3735-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24589671 [Map]; Strand: c
      • AT1G66050.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3735-1 - 5-prime edge 
    CCCGGAGCGG CGGAGGGAAC AACAACGCCG GAGCAATCGG GACACTCCCA 
    GTCTCCAGTG GAAGAAGCGA GTGATTCAGG AAGGAGACAC GACACGTGCC 
    ATGGAGTGAC ACAGGTGCCA CACNGTGAGA GTCTCTTCTG ACGGAGGATT 
    CACCTGGCAC CGCATACATA CACCGTCTCC GTCGCAAGGA AGCTGAGTTT 
    GAATCGCCAT TGTTGAAACG AGTGAGTGAG AGAGAGATTT AGAGAGAAAA 
    TGGTGTTGTC GAGATTTGTG AGAGATTTAG GCTAAATAAG TAGAGGAAGG 
    CGAAAAGTGA AGAGGCGGGT TTTGAAATTT TGGGAAGACG AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24589787 [Map]; Strand: c
      • AT1G66050.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3735-1 - 3-prime edge 
    GCTCCGGGTA CCGGAATCTC CGGACCTGAA TCTTCCGGTT CAGTTCTCGT 
    TACTGCGATC CGTGCGATTC AGGCTGATGT GACTTTGACC GAAGCTGAGA 
    AAGCCAAAAA GAGGCAGAGA CTGATGAGTG GTGGTGGTGA CGATGGTGTC 
    GATGATGAAG AAAAGAAGAA GTTAGAAATC TTTTGTTCTA TTTGCATTCA 
    ATTGCCAGAG AGACCTGTTA CGGTTAGTTT TCACTCGCTA ATTTATGCTT 
    GTGACTTGTG TTAATATCTT GTTAGATCTT GTGATCAATA CACATAAGCC 
    CTACTAAATC GCTAATTTAT GCTTGTGACT TGTGTTAATG ACTTGTTAGA 
    TTTTGTGATT AATACACATA AACTCTACTA GAATCGCTAA TTTATGCTTG 
    TGATGTGTTA AGTACTTGTT AGATCTTGTG ATTAGTGTTG ATAATAGTAG 
    TAGAATCACG AATTTATGCT TGTGATCTGT GCTAATGACT TGTTAAATCT 
    TGTGATTAGT ACACATAACT GTAGTAGAAT CGCTAATTTA TGTGTTTGTT 
    GTTGATAAGG ATGATTAATA TTTGAAGTAG CACACTAATG GGCTTATTTG 
    CAACCAGTCT TATGCTTGTG GTCTGTGTTA ATGCCTTGTT TAATCTTGTG 
    ATGAGTACAC ATAAGTGTAG TAGAATCGCT AGTTTATTTG TATACTTGAT 
    AATGATGATT AGTGTATTCA AG

AT1G66050.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Curator Summary
Encodes a protein that is similar to VIM1 but is not involved in cytosine methylation. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. ORTH5/VIM2 has E3 ubiquitin ligase activity in vitro.
Computational Description
VARIANT IN METHYLATION 2 (VIM2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G66040.1); Has 6271 Blast hits to 5010 proteins in 428 species: Archae - 0; Bacteria - 14; Metazoa - 4526; Fungi - 407; Plants - 903; Viruses - 19; Other Eukaryotes - 402 (source: NCBI BLink).
Link
InterPro Scan - TAIR