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54-3565-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24300611 [Map]; Strand: w
      • AT5G60410.1 - [+] show detail - DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
        Distance: 0; Region: exon17 (CDS)
      • AT5G60410.2 - [+] show detail - DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
        Distance: 0; Region: exon17 (CDS)
      • AT5G60410.4 - [+] show detail - DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
        Distance: 0; Region: exon17 (CDS)
      • AT5G60410.5 - [+] show detail - DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
        Distance: 0; Region: exon17 (CDS)
      • AT5G60430.2 - [+] show detail - drug transmembrane transporters;antiporters
        Distance: -997; Region: promoter
    Flanking Genome Sequence: 54-3565-1 - 5-prime edge 
    CTTCTGGGTA TGAATGACAG TAGACAAGAC AAGGCAAAGA AGCAAAGATC 
    AGATAATCCA TTTTCATTTC CTCGCCAGAA GCGTTCTGTA AGACCTCGGA 
    TGTACCTCTC CATTGACTCG GATTCTGAGT AATATTCTTC CTGATTTGTC 
    TGTTCTGTTG TGTCTCTCTT GGGATGATTC GGTGTTCCTT TTGATTCTTA 
    ACGCTATGCA CAGAACAATG AACAGGATCA TCAGACAAGA CACCGGAGTT 
    TAAACAAGAT TTGCATAATT CTCTGTGCAG GCAAGAATTG AACCGGTATT 
    GATATTTTCA CTTGTATGAT GTTGTTGACT CTCTCTTCAA TATCGGTTCA 
    GAATCTTGGC CTTGTCTGCT ACACTGCAGG ATGTATTTTG CAAAGCGAAG 
    CACTGGCTGA TTTAGTTTCT CTGATAGAAA AGAAAAGTGG GCACAGTGGT 
    TCCGATTTAA TTAGTAGTTT GTATACTCGA AATAGGTTTT TTTTGTGGTG 
    GACGATGATA AAATTACTTC GAAGCCAGGA GCTATAGAGA GATATAGCAA 
    TGTAAATTAT GGGCTCCAAA TTTTATTTAT TAATTAGAAA AATTCAGCTC 
    TTCTCCTCCA TTGCAAATTG TGTTGCATGT GATTAACTTC ATGGTTATGG 
    TCAAAGCCAG AAGCCCAGAA GCATTATACT TCTCTGCCAA AGACAAAGAA 
    NA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24300495 [Map]; Strand: w
      • AT5G60410.1 - [+] show detail - DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
        Distance: 0; Region: intron16 (CDS)
      • AT5G60410.2 - [+] show detail - DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
        Distance: 0; Region: intron16 (CDS)
      • AT5G60410.3 - [+] show detail - DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
        Distance: 0; Region: exon16 (3UTR)
      • AT5G60410.4 - [+] show detail - DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
        Distance: 0; Region: intron16 (CDS)
      • AT5G60410.5 - [+] show detail - DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
        Distance: 0; Region: intron16 (CDS)
    Flanking Genome Sequence: 54-3565-1 - 3-prime edge 
    CCCAGAAGCA ACGACGCTGC AAATACGCAG TAATAGTCAG TAAGTATACC 
    ACATGGACTA TGGACATATA TAAAGTAGCA TATTCAAAGA CAAAATACGC 
    CACATAGAAA CTAAAACAGA TATTTCTTCT TCAGTTGTTT ATAAGACCTA 
    GCTAGCAGCT TAGTAAAGTG ATGAAAAAGG TAATGCAACA TCAAGAACAT 
    GGTCCACATT TTTAGGTCCC TTTGATGTTT TCAGGAAAGC ATTAGTCTCA 
    GACAGGGAAC AAACCAGTCT CTGTTGTAGT ATCCATAGAA CCTTCCCTCG 
    TAGACATCTG ATGGCTTGAG TTAATCCCGT TTGTAGTTGC AGGATCTCCA 
    TGATTCCCAG AGGCGCTATC GCCTAGCCTA AGCGAGATCC AGTCTTCACT 
    ACGGAGACCA TTTGACATAT CAGCTTGGTT TTTAAAACCC GACTGAGCTG 
    AAGCATCTGG TTTTGTTGGC AAAAATATTT GAAGTGAGGG ATCGTCTCTA 
    CCAAATGCAA GAGGATTGTC AACTAGGCCA TCGTTTGCTT CAGATCGGCC 
    AGTAGAGCCA GGAACCACAG GAACAGATGC CATTGATGTC TCAGGAGCCA 
    TGGTATAACC TCCATTTATT TCAGGAGAAC AGTTTAGTGG ACTATGATGA 
    TGCAAACCAA CTAAACCTNC TGAAACGTCA GCATCAGATC TAAATAGTTG 
    GAACCCANGG GCTTCTGGAG TTTCN

AT5G60410.1

Model type
Protein coding
Short Description
DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
Curator Summary
Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation. signaling
Computational Description
SIZ1; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Zinc finger, MIZ-type (InterPro:IPR004181), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41580.1); Has 1186 Blast hits to 1185 proteins in 207 species: Archae - 0; Bacteria - 6; Metazoa - 654; Fungi - 241; Plants - 117; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60410.2

Model type
Protein coding
Short Description
DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
Curator Summary
Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation. signaling
Computational Description
SIZ1; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Zinc finger, MIZ-type (InterPro:IPR004181), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60410.3

Model type
Protein coding
Short Description
DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
Curator Summary
Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation. signaling
Computational Description
SIZ1; CONTAINS InterPro DOMAIN/s: Zinc finger, MIZ-type (InterPro:IPR004181), DNA-binding SAP (InterPro:IPR003034), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41580.1); Has 1181 Blast hits to 1180 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 655; Fungi - 241; Plants - 117; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60410.4

Model type
Protein coding
Short Description
DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
Curator Summary
Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation. signaling
Computational Description
SIZ1; CONTAINS InterPro DOMAIN/s: Zinc finger, MIZ-type (InterPro:IPR004181), DNA-binding SAP (InterPro:IPR003034), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41580.1); Has 1191 Blast hits to 1190 proteins in 207 species: Archae - 0; Bacteria - 6; Metazoa - 659; Fungi - 241; Plants - 117; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60410.5

Model type
Protein coding
Short Description
DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
Curator Summary
Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation. signaling
Computational Description
SIZ1; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Zinc finger, MIZ-type (InterPro:IPR004181), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60430.2

Model type
Protein coding
Short Description
drug transmembrane transporters;antiporters
Computational Description
drug transmembrane transporters;antiporters; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: proteinaceous RNase P 3 (TAIR:AT4G21900.1); Has 105 Blast hits to 104 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR