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54-3439-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17913705 [Map]; Strand: w
      • AT4G38190.1 - [+] show detail - cellulose synthase like D4
        Distance: -64; Region: promoter
    Flanking Genome Sequence: 54-3439-1 - 5-prime edge 
    GACGCCATTG TGAAGCCAAA CAAAGGAGCT TGGTTNCTGC AATGTGATCA 
    TGCAGTATAA AGATGAAACA GTGACTTTTT TACCTTCTTG TTGATTTTGG 
    CAAAACAGAG AGAAAGATNA GGAGGAGAGG ATTATCAGGA CACAAAACTG 
    TTTATGCCAT GGATTCCTAT TTTTGGGCTT CTATGTATCA TGCACTAACC 
    TATTTTAGGA AGCTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17913630 [Map]; Strand: w
      • AT4G38190.1 - [+] show detail - cellulose synthase like D4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3439-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ACGCCTCCTC AAACTTCTAA AAAGGTCCGT AACAATTCCG GTAGCGGCCA 
    AACCGTCAAA TTTGCAAGAC GAACATCTAG CGGAAGATAT GTGAGTTTAT 
    CTCGAGATAA TATAGAATTA TCAGGCGAGC TCTCCGGGGA TTATTCTAAC 
    TATACNGGTG CACATACCTC CGACGCCGGA CAATCAGCCC ATGGCCACCA 
    AAGCCGAAGA GCAATACGTG TCAAATTCTT TATTTACTGG TGGTTTCAAC 
    AGTGTAACAC GTGCACATCT TATGGACAAA GTGATCGATT CAGATGTCAC 
    ACACCCTCAG ATGGCTGGCG CTAAAGGCTC TTCGTGTGCC ATGCCTGCTT 
    GCGACGGAAA TGTCATGAAA GACGAGAGAG GAAAGGACGT GATGCCATGT 
    GAATGCCGGT ATATATTAAT AAACACTAAT TGATATCTTT TACTTGTTGC 
    ACAAGAAAAT GAGGTTTAAT TCTAACTAAC CAACAAACGT GGTGATGATT 
    GTCTTTGTAG GTTTAAGATC TGTAGGGATT GCTTCATGGA CGCCCAGAAA 
    GAGACAGGCC TTTGTCCAGG ATGCAAGGAA CAATACAAAA TCGGGGACCT 
    AGATGACGAT ACGCCTGACT ATTCTAGTGG TGCTCTCCCC TTACCAGCTC 
    CAGGGAAAGA TCAACGTGGG AACAACAACA ACATGTCTAT GATGAAGAGG 
    AACCAAAACG GTGAATTTGA TCACAACN

AT4G38190.1

Model type
Protein coding
Short Description
cellulose synthase like D4
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase like D4 (CSLD4); CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3503 Blast hits to 2866 proteins in 674 species: Archae - 22; Bacteria - 1611; Metazoa - 5; Fungi - 10; Plants - 1761; Viruses - 2; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR