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54-3387-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 523421 [Map]; Strand: c
      • AT2G02090.1 - [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-3387-1 - 5-prime edge 
    ATCGCGTTTC ATCTTCCGAG AATTTACGAA TCCCAGATTG AATTGAAATT 
    GAGAAGAAGA AAAAAAAAAT TCACATGAAN AAAATTGAAA NCCCTANATT 
    GANATTGAAG NGACTATTAT TGCNTCGAAT TGAANAANAA NAANAAGATG 
    AAATTAAAAC GAATTTANCG GANAAGGAAG GGAAAGGTCA ANATTTCAAA 
    GAANGGTTAN AGACTCANCA NCGTGTTGCT TCTTACAAAA NAGCGGCNTC 
    CTCCAAAAGC TNTGCCCGCG GACTTAATCT NTTAATGGGC CCCAANAAAN 
    GGGCTCTAAT GAGTNCTTAA TGGNGAACTT AAGGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 523537 [Map]; Strand: c
      • AT2G02090.1 - [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3387-1 - 3-prime edge 
    AACGCGATTT CGACGAAATC TCCGAGGAAG AGTGGTCTCA ACACTCGTTT 
    AACGCTTCGC GAGTTCTTAA ACGACCACGG ACTCCGAAGA AGACTCGCGC 
    GGCGACGAAT CCAACGCCGT CGATTGAGTC TTTTGCGTTT AGGAGACCTT 
    CGACGGCGAT GACGATTGAG AGTAATAGCA GCGATGGTGA TTGTGTTGAG 
    ATTGAGGATT TGGGAGATTC GGATTCGGAT GTGAAGATTG TGAATGGTGA 
    GGATTTGTTG TTAGAGGATG AAGAAGAAGT GGAAGAGACT AAGGTTGTGA 
    TGCGCGCTGC GAGAGTTGGT AGGAGATTTG TGATTGAAGA TGAAGAAGCG 
    AGTGATGATG ATGATGATGA GGCTGAGAGT AGTGCTAGTG AGGATGAATT 
    TGGAGGAGGA GGAGGAGGAA GTGGAGGAAG GAGAGGAGAA GATGAAGATG 
    TTGTGGGGAA GGCATTGCAA AAGTGTGCTA AAATCTCAGC GGATCTTCGA 
    AAAGAGCTTT ATGGTACTTC TTCTGGTGTT ACTGATAGAT ACTCTGAAGT 
    TGAAACTTCT ACTGTCAGGA TTGTCACACA GGTACTGGAA ATTATCACTC 
    TGGTGTTCTT AAAGTAGTTG CTTTGAGACG ATTTANAGTG TCTTCCTTAT 
    ACAATTGTGA CGTAGCTTTT GATTAGATAG CATATTTTGG TGGTAAGCTT 
    TGANAANCAA NAAGAN

AT2G02090.1

Model type
Protein coding
Short Description
SNF2 domain-containing protein / helicase domain-containing protein
Computational Description
ETL1; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 5 (TAIR:AT2G13370.1); Has 19948 Blast hits to 16374 proteins in 2059 species: Archae - 127; Bacteria - 6550; Metazoa - 3755; Fungi - 4012; Plants - 1782; Viruses - 219; Other Eukaryotes - 3503 (source: NCBI BLink).
Link
InterPro Scan - TAIR