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54-2908-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22493050 [Map]; Strand: w
      • AT1G61070.1 - [+] show detail - low-molecular-weight cysteine-rich 66
        Distance: -508; Region: promoter
    Flanking Genome Sequence: 54-2908-1 - 5-prime edge 
    AGCTCCCATG AAACTTCTAA AATCCTAATT TTTTTGAGGG AGCATCAAAA 
    ATTATACACA TTCAAAAGTC AAAAACAATA GGTTAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22492932 [Map]; Strand: w
      • AT1G61070.1 - [+] show detail - low-molecular-weight cysteine-rich 66
        Distance: -390; Region: promoter
    Flanking Genome Sequence: 54-2908-1 - 3-prime edge 
    GGAGCTCGGA GATACAGAAT CTTTTGAGTG AAAAGGCTTT AAGAACCTTT 
    TAAGTCAAGC AAGACCTTTT GTGTTGCCAC AATATGTAAT ATTGTTTTGC 
    TGTTATCTAT TAAGTTTTTC TTTCTTTTAA CTTTTATTTG TAAACTAAAA 
    TGTCTTTCAT TTAGCACCTT CAATGCCATA TCGAAATACA CAGATACTAC 
    TGTGTCACTA AATAATTTCA CATTTTGAAT ACTCTTCATT CACATGTATA 
    TATAATTATA TTCTGCCAAA ATTTAGTTTC ATAAACCAGA TTTTATAATT 
    GTTTACAACC AAAGAAACGT GAATAGAGAA AGAACCAAAG AAACGGCGAT 
    ATTGTGGTCA AACAACCACT CTATCTGATA ACAAAAACAC GTCCAACATG 
    AATTAATATA AATGTATTCA AAATAAATAA ATAGTCTCTT ATCATATCAA 
    TCTTCAGTTC CTTATATAAT AAGTTTCACC TTCTTCCTTA ATAGCTCTTC 
    AAAACACTTT TGTCCAAAGA TCTCTCTTAA AAAATGAAGG TCTCTCCTCG 
    TTTGATCTCA GCCCTTCTCC TATTGTTCAT GATCCTTGCC ACAGGTTCTT 
    AATCCATACC ATCATGATAC ATCTAAATAA AAACTCATGT CAACATGTAA 
    TCATCTACAT AATATATTTG CAAGTCTACA TAATATGATA CATATCTTGG 
    TATCCGTCAT TTT

AT1G61070.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 66
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
low-molecular-weight cysteine-rich 66 (LCR66); INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 68 (TAIR:AT2G02130.1); Has 405 Blast hits to 405 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 405; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR