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Mutant Lines
54-2373-1

54-2373-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 19622203 [Map]; Strand: w
- AT2G47940.1 - [+] show detail - DEGP protease 2
  Distance: 0; Region: exon1 (5UTR)
- AT2G47940.2 - [+] show detail - DEGP protease 2
  Distance: 0; Region: exon1 (5UTR)

GGAGANGCAT CAGTCTGCTN CNGAGGCGGC CATATCGGCC GGCAGAGAGA 
GACACACAAA CTACAGAGAG AAGTGAGAAG AACGAGAGAA NAAGAGAATC 
CTTTTTTTGA TTTTCTTATC CACTCTCGCT NNTTTGGCGC CTGCATCTTC 
ACTGGACCCT GCTTNTTNCC NATATNNACA TAANNACCAC NGGGNCCTAA 
TGGNCCCCCT TNTAACATTC ATGGGCCTAN TATNTGNTTT AATTATATGG 
AGCTGCCCAT TCCACNACCA CCAGATGANA ATGAATGTCA TNTGCTTTNC 
ANNANCNACA ANCCACAANC ATNCNATATA NGGCTTANNN ANGAACTACA 
NTGGCAACAN NATNATCCTN TTACTTTNAA ATATTTGNGG TCGAGGTNGC 
AGANGNATTN NNANAAAANN TCAAACCCNN ATNAAACAGA GNTAAAGNAN 
GNANAAACAG GANNAGNTNA GTACNNAGTT NNNATNGNNN TANATNTNGA 
TANGGANNAC AATNNCNANN ANCGNNGAGN NGANANNTNN NANANNTATT 
TTNANTNGGG GGANNNNTNT TGCATTNNAN GAGNNGTTAN TGNGCNNNAN 
TTNNATANNN NTNNTGNNAN ANNGTAATTN AGNNTNANAT NTTATAANAT 
NGAGANANAA AACAANTAGT GAGANANANN NAANANATNG NTANANAGCT 
TNNTNNNTGG CTNNNNGTNT ANTANAANNN NATGAGAANG GAAACNNAAA 
ANNCANAGT

3 prime edge [+] show sequence

Chromosome: 2; Position: 19622087 [Map]; Strand: w
- AT2G47940.1 - [+] show detail - DEGP protease 2
  Distance: 0; Region: exon1 (CDS)
- AT2G47940.2 - [+] show detail - DEGP protease 2
  Distance: 0; Region: exon1 (CDS)

GCTTCTCCGT CCTCAATGCC TCCGTTAAAA TTCAATCTTC GTCCATCTCC 
TCACCGTGGT GTTTCGTGTC CGCATCGTCG TTGACTCCCC GAGCTTCCTC 
CAATATTAAG AGGAAATCGT CGAGGTCTGA TTCACCATCT CCTATATTAA 
ACCCAGAGGT ACATTCCCCA CCTCATAAAC TCTTCAATCA ATTCCCCCTT 
CGTTTTTTCT TCTTCTTATA TGGTTGGAAT TATTCGTTGC AGAAGAATTA 
CCCAGGTAGA GTTCGAGATG AAAGTTCCAA TCCTCCTCAA AAAATGGCTT 
TCAAGGCTTT TGGGTCACCC AAAAAGGAGA AAAAAGAGTC TCTTTCTGAT 
TTTAGTCGAG ACCAACAGGT TTGCTTCCTT CTCCTAGTCG GGCATTTGTA 
TTTCCTGTGG TCTAATGCCA TTTCCTTGTG CAGACTGATC CTGCCAAGAT 
TCACGATGCA TCCTTTCTCA ACGCTGTTGT CAAGGTTTCG AAATCAAATT 
CGCTTTCTTC CTTAAAATTC ACTCTGCTTG CTTTTGAACC CACCCGTGCT 
TCTTTCCAGG TTTATTGCAC TCATACTGCT CCTGATTACT CCCTCCCATG 
GCAGAAGCAA AGGCAATTTA CTAGTACTGG AAGGCAAGCT

AT2G47940.1

Model type: Protein coding
Short Description: DEGP protease 2
Curator Summary: Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.
Computational Description: DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 15046 Blast hits to 15035 proteins in 2533 species: Archae - 101; Bacteria - 10614; Metazoa - 317; Fungi - 14; Plants - 376; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47940.2

Model type: Protein coding
Short Description: DEGP protease 2
Curator Summary: Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.
Computational Description: DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR