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54-2300-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25889509 [Map]; Strand: w
      • AT5G64740.1 - [+] show detail - cellulose synthase 6
        Distance: 2815; Region: intergenic
      • AT5G64750.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1997; Region: intergenic
    Flanking Genome Sequence: 54-2300-1 - 5-prime edge 
    GTTTTGGGTA CCTAGTTTGA TAAGAAATTC TTCTTATTTC TTTTCTTGAA 
    AAAGGACAAG TTGATGAAAA AGACATTATC GTACGCCTTA ACTTAAATTA 
    AACTGATCAC GCCTCGTTCT CCGGTTTTGC CATGTTAAAC AAGTTTAATA 
    TTTACAAGTT GGATGCATAT TCGTATAATA ATACGTAACT AATCCGAATT 
    GAATGCTTAA TTGACGTGTT GATGCGAACT TAATTAGGGA TTAGGTTAGG 
    CGATAGGCAC ACACAAGCAT GGTGAAAACA TAAATTTATT TAATAATCAC 
    TATGTTTCCG TATTTGGATT GATCTTTGAA GACTCGATCT CTAAATTTGT 
    TTTATTTTAC TACTAATTTT TATTTGATAG ACATATTTAG GTATTTTTAT 
    CGCCTAAGTG ATTAAAAGCT ACTGTATGTT ATAGTGGAAT ATAATTAAAC 
    TGGATTAGTA TAAAACAGGG CATCTTAGTT TCTAAAAAGG GAAATGACCG 
    GTGAAAAGGT TTATCCAGTT TTTTTTTTTT TTTTTNGGGG GGGTTNNCCA 
    AAAAAATTTN NNNGGGNCNN AANTTTTTTG NNNCCNTTTT TTAAAAAAAA 
    AAANCNGNCC CCNGNCNNTT TTTTTTTTTT ANAAAANNTT NNNCCCCCCC 
    CCAAAAAAAA NNNNCCNNNA AAAAAANNNN NTTTTTTTTT TNCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25889393 [Map]; Strand: w
      • AT5G64740.1 - [+] show detail - cellulose synthase 6
        Distance: 2699; Region: intergenic
      • AT5G64750.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -2113; Region: intergenic
    Flanking Genome Sequence: 54-2300-1 - 3-prime edge 
    CCCAAAACTG ATATCACAAG TGCGATGTGT AGTAATGAAG AATCTATGTA 
    CAAAAGGTAC CAAAAATCGT ATCCATTTAA AATGAAAAAA AGAAGTAAAT 
    TCACATAAAT TGTGACTTTT AAAGTATTTT AATGATTTAG AGTAGTTGTG 
    TTTTTAATCA TGTACTTATG TTTTATATGA GATTATGAGT TAATGGAATA 
    AATTCTGGAA ACTGTGGCCA CTTGTATATA TAAATATCTC AACGATTGAC 
    AATTTCGTAT CGCCACTTGA TAGTTGTCTA TCGAAATGAT GTACGACAAA 
    ACAATTAGAA ATATTGATAT AAATAAAATT AGTAATGCGT TACTTATTAA 
    TTAATATCTC GTTAATTATC AGAGCTTATC TGTACGGATA AGTAAATGAT 
    ATAATTAACA CAGCTTTAAT CACCCGCTTA GTCGCAAACA ACACGTGATG 
    ACGCAAACAC ATTTAAGAAA TGGTTACTTC CGTTGAAAAG GTGGTGTCGA 
    CATGAAATCG GATTCTACTA TGTTCTTTTC TTCTTTTTAG TGCTAGCTAC 
    TATATATGAA CTAAGCCGAA ACGAATACAG TACTAATATA AAACATTATG 
    TATCTACCTA CGGTGTAAAG AGAAACGACA TAAGCGTTGC ATCTTTGATT 
    ATTCTATCTA TATTATAAAC CTTTATGTTG ATTACTCGAT TCATTGTATC 
    TACCACCGGT GTTT

AT5G64740.1

Model type
Protein coding
Short Description
cellulose synthase 6
Curator Summary
Encodes a cellulose synthase isomer. CESA6 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA6, along with CESA1 and CESA3 are present in the same plasma membrane complex for cellulose biosynthesis. CESA2 and CESA5 are related to CESA6, having partially redundant roles. As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening.
Computational Description
cellulose synthase 6 (CESA6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: in 6 processes; LOCATED IN: cortical microtubule, transverse to long axis, Golgi apparatus, cellulose synthase complex, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: cellulose synthase 5 (TAIR:AT5G09870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64750.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes a putative transcription factor containing an AP2 domain. Is a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. Expressed in response to ABA, osmotic stress, sugar stress and drought. Mutants are hypersensitive to these stresses. May be involved in regulation of ABA mediated stress response.
Computational Description
ABA REPRESSOR1 (ABR1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR