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54-2249-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25581790 [Map]; Strand: c
      • AT5G63920.1 - [+] show detail - topoisomerase 3alpha
        Distance: 413; Region: intergenic
      • AT5G63930.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -1216; Region: intergenic
    Flanking Genome Sequence: 54-2249-1 - 5-prime edge 
    CTCGCCGGAT CCTCTGTTAT CTCAATTTCG ATTTGAGAAT TTTAAATCTT 
    TTATGTTCAA AATGGACTGA AAATTGGTGT GCCGTTTTTA AACAACAAAA 
    CGGCGTTTAT TCCGGTTGTT GTGTCGTTTT CTTACAGAGC AAAACGACTG 
    TGTNTTGTGT TATTAACAGT TGNTAATATC TATTACTTGA CCATCTCTAA 
    AAACAAATTC GGAGGACTAA ACTATGTAGC TTAAGCATTT TGTTAATATC 
    TATTACTTGA CCATGTCTAG ACTCAAGATC AATGGCATAT ACATAGTGAT 
    ATAGTTGATG TCTGAATTAT GANTTATGAG ACAATACAAA ANAAATNNTC 
    NTTTATGNAN CNACANAANN NAACTTGGAT TCCGGGCCCG ATTNGNANGN 
    CTATACCANA NCTAAAGATA AAAAACGCGG AGGCTANGGN ATGANCNAAN 
    ATGGNNCAAA ANNANTTGGG NGTTGAAATA TNAAAACNTA AATTTTTTTN 
    NGNAAAAACA GCCNGGCTNA CNGGGATCTC CGCNTTTTAG NATNAANGGC 
    GNAAAANAAG GNGGNCANNG CNNCNGGTAA AAAAAANTCC CAAANCCCCA 
    TTTAAGTNAN GGNCCCCNAG GNAGGGNNGC TACTTACTTA GGGAAAGNCN 
    NAANNGGCAA ACTTAAAANT TGNCCCGGGG NGGGNTTTNA CAAATGNGAN 
    AAAGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25581906 [Map]; Strand: c
      • AT5G63920.1 - [+] show detail - topoisomerase 3alpha
        Distance: 529; Region: intergenic
      • AT5G63930.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -1100; Region: intergenic
    Flanking Genome Sequence: 54-2249-1 - 3-prime edge 
    CCGGCGAGCT TCTCCGGCGT AGGATTCGGG TCATTTTCTT CGGCAACTAT 
    GAAAGGGAAA AAAAGAGAGA GAGAGGTGAT TACTGATTAG GCCGTCTCCT 
    GTGGAACAAG AACGCGTTTC TTCTTACATT CCTCATCGAA GGAGTTGTTG 
    TAGCCACTTG AGGTACTTTT CATACTAATC TTGGAATTTG TATAGCTTGG 
    TTCGGTATAT TGAACAGTCA ATTAGGTATC TTGCTGTGAA TGATCAAGTG 
    GGTACTTATC ATTGCCTCTT CTTAGTAGTC TCATTACAAG ACTGAAGTTT 
    GGTCTCAAAA TTGACAAGCT

AT5G63920.1

Model type
Protein coding
Short Description
topoisomerase 3alpha
Curator Summary
Encodes topoisomerase 3alpha. Suppresses somatic crossovers. Essential for resolution of meiotic recombination intermediates.
Computational Description
topoisomerase 3alpha (TOP3A); FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: in 7 processes; LOCATED IN: chromosome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, zn finger (InterPro:IPR013498), DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, central (InterPro:IPR013497), Zinc finger, GRF-type (InterPro:IPR010666), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), Toprim domain, subgroup (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), Toprim domain (InterPro:IPR006171), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: DNA topoisomerase, type IA, core (TAIR:AT2G32000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63930.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT2G33170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR