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54-2080-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26431069 [Map]; Strand: w
      • AT5G66110.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 157; Region: intergenic
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 307; Region: intergenic
    Flanking Genome Sequence: 54-2080-1 - 5-prime edge 
    GGCAAGCCAT GACCCAAACA GGGTATATCA GAAGCAGTGT GTAACAGATG 
    ACGACAAGGC AGTAGCAGAC GAGACTCGCC ACTTTCTCGA TAGCTTCTCC 
    CACCGGCATC TTGATTTGCG TATTTGCTAC TCCTCTGGAT TACATGACTT 
    CATTTAAATA AATAGTAAGA AACACACACA GAGTCTTTGG AGAAATACAT 
    GCACAAGAAG TTGTTTCCTC TCTAAACGGG ACAATGCATC CCGCATTTCA 
    GCCCTTCCTC TGTTTCTTCT TTTTCCCCTC TGTTTTTGCA TCTTCACTGT 
    GTTTACGTAA CAGAAACGTG CTTTGTCATA AAGCTCAAGT AACAATTTCA 
    AGAGGCAAGT ATCCAAATTG AAACGCATAT GGTGTCCAAT AACGGGGTAT 
    TTCTTCTTTT AATATCTCAT TATTATCACA TTCCACAAAG CTAGTTACAA 
    GGTCAGTATA TATGAGTACA TATGCGTATG TGAACAAAAC AACACCAAAA 
    TTATCTCAAA TATGAAATGC TCAGGATTTG GAGAATGCAC GAAGCGTGGC 
    ATCCAACGCT TCCCGATCAT AATCTCCAGT GAACACGCAG TTTCCCAGCG 
    GGCCTTTGAG AAGAATCAGC CTCAGCAGTC CATCTGCCAC TTTCTTGTCC 
    ACCTGCATCA CCACACACAT TTCAATGAAT TTTTCTTAGC TCAAAAGTTG 
    CTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26430953 [Map]; Strand: w
      • AT5G66110.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 41; Region: intergenic
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 423; Region: intergenic
    Flanking Genome Sequence: 54-2080-1 - 3-prime edge 
    GGCTTGCCTA ATCAGTCTAT TCATGGCTTC TCACCTTTCT CTCTTCTTTC 
    TCTTGTTACT CCTCCATCTA CTCACCTCTC TCTTCTTCTG TTTCTCCCTT 
    TTAATTTCAG TGGAATTTAG ATGATGACTC GTACAAACAT TCAGACTGTC 
    TTTTCAGAAT TACTTAAAAA GGGTATATAA AAACACTTAC ATAGTCACAT 
    GTGTAGTTGA CTATATATAT AAATTGATCA CATGATGGTA CAAGCGTTGG 
    GATTGTCATC GCTGAAAGCA GAAGTGTATT TGACCTCGAA GGAGCTGGCA 
    CGAGCAAGCG GGGCCACTAG AGGGTCGGTG AGTGCATTAC GAACGTAACC 
    AGGAGGGGCC TTCTTGTCGT AGGCACCAGG TGCGTAAGGG TGTGGCACCA 
    CCTCGTAAGG TACGTAAGGC CACAGCTCCG CCTTCTTCCC TGTCCGATGC 
    ATCACCCGAT GCACCACCTT GCTCGGTTGG ACGAATCCCT CGACCGTGAG 
    TTTGCTCTGT TTAGGATCGA CGGTGACTTT GCTGACTCCT TTCATGCCTT 
    CCACCGACTT CCTCACCCGT CTCTCGCACC CTTCGCAGTC CATCTTCACT 
    TTTATCTCCA CCTTCTTTTT TCATCATACG AAACACAGTC TCGTTACACA 
    ACAGTTACAA GCAAAAAAAA GGAATCAGAT ATATCAGAGA AGGGAGAAGA 
    GTGCCTGGAA CTGCTTA

AT5G66110.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: farnesylated protein 6 (TAIR:AT4G38580.1); Has 1185 Blast hits to 1108 proteins in 39 species: Archae - 2; Bacteria - 2; Metazoa - 2; Fungi - 3; Plants - 1176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66120.1

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates; INVOLVED IN: aromatic amino acid family biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase (InterPro:IPR016303), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 8426 Blast hits to 8421 proteins in 2521 species: Archae - 162; Bacteria - 5225; Metazoa - 16; Fungi - 182; Plants - 46; Viruses - 2; Other Eukaryotes - 2793 (source: NCBI BLink).
Link
InterPro Scan - TAIR