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54-2028-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 90580 [Map]; Strand: w
      • AT3G01290.1 - [+] show detail - SPFH/Band 7/PHB domain-containing membrane-associated protein family
        Distance: -1158; Region: intergenic
      • AT3G01300.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 18; Region: intergenic
    Flanking Genome Sequence: 54-2028-1 - 5-prime edge 
    GNATCANACA GACAAAAAGT GNNTTGGATN ACCNNNCCGG GCCGTNNACC 
    ANAGCNTTGC CCNATATGGT GGTTGCATGC TGGTGAAGCG ATACGAAACG 
    ACTAATACAT AATGACAATA TTACCCTAAC AGACAATTTG TTCAAGAGTT 
    ACAACAGACG AAGAAACATG AGGTCACAAA GGTAGTAAAT ACACAAATTC 
    GGATCTTCTT CGGAACAACC TTAATTTTCC TTCTTTAAAT CGGTTAACAA 
    TGTCGGTTTT ACATCGGTTA AAAAAGACGT TTGCTTGCGT CCACACTTGC 
    GAGCCAATCT AAGTAGTTGC ACCTTTAGGC TTAGGAGACG GAATCTGATG 
    ACGATAAGGC GACGAACCAG CTTGACCATG AGGACTAGAC AATGTCCGAA 
    ACACTGGTTG CCCGTTTCTT GACCCAAATC CACGACCAGA ACCAGAACCA 
    GACCCAGCTT TCAAACGTTC AGCTTGCATT GTCTGGAAGT AGTAAGAAGC 
    GCTAGCCATG TCCTTGAGGT GTGGGAGAGG CTTAAGGACT TCCACCACTT 
    CACTCATTTT GGGTCTTATT TTGGAGTCAC GGCTAAGGCA TTGTGCTGCA 
    AGCTGAGTCA CTTTTTGTGC TCCTTTAACT GAGAAATGAC CCTCCAGCCT 
    CGGATCAAGT AACCGGTAGA ATCTTCTTTT GTCCAGGAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 90519 [Map]; Strand: w
      • AT3G01290.1 - [+] show detail - SPFH/Band 7/PHB domain-containing membrane-associated protein family
        Distance: -1097; Region: intergenic
      • AT3G01300.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 79; Region: intergenic
    Flanking Genome Sequence: 54-2028-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TGGGGGTGAG AGACATTTTG CTTTGAAATT TTGAAAATTT TCTTCTCTTT 
    GATTTGTTGG ACTTATCTAC TTGTAGCTTG TCGATAATCG AGTTATTAAA 
    ATATAAATAC GAAAGAAGAA AACTGACAAC TTTTTCTTAC GTGAAACNTT 
    TTATACTCAC ATACAAGTTA TCCACTTTCT TGGTTAAACA TGCGAGCCGC 
    AAGGACCAAC GACTTTTATA TACAAATAAT TTCCTTATAA AAAGGATTAC 
    AGTAAGATAC TTTGCACACT AGCAAGCT

AT3G01290.1

Model type
Protein coding
Short Description
SPFH/Band 7/PHB domain-containing membrane-associated protein family
Computational Description
SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 7523 Blast hits to 7522 proteins in 1968 species: Archae - 210; Bacteria - 4831; Metazoa - 573; Fungi - 279; Plants - 280; Viruses - 3; Other Eukaryotes - 1347 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01300.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G15080.1); Has 113948 Blast hits to 112631 proteins in 3965 species: Archae - 101; Bacteria - 13609; Metazoa - 41797; Fungi - 9320; Plants - 32432; Viruses - 368; Other Eukaryotes - 16321 (source: NCBI BLink).
Link
InterPro Scan - TAIR